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Sample GSM474308 Query DataSets for GSM474308
Status Public on Jan 30, 2010
Title STZ1
Sample type RNA
Source name STZ-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: Streptozotocin
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337002_A
Replicate 1
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 90.54942 0.00877193
ILMN_1212612 602.7376 0
ILMN_1212619 181.9302 0
ILMN_1212628 48.87062 0.7117795
ILMN_1212632 77.44154 0.03508772
ILMN_1212636 1229.189 0
ILMN_1212637 1575.914 0
ILMN_1212645 769.8863 0
ILMN_1212648 290.2111 0
ILMN_1212653 152.3165 0
ILMN_1212672 170.7208 0
ILMN_1212682 78.48587 0.03007519
ILMN_1212683 50.51777 0.6115288
ILMN_1212685 51.54757 0.5538847
ILMN_1212692 74.51326 0.05263158
ILMN_1212693 86.50567 0.01253133
ILMN_1212695 86.0158 0.01253133
ILMN_1212698 40.38993 0.9874687
ILMN_1212702 4619.389 0
ILMN_1212703 126.6133 0

Total number of rows: 25697

Table truncated, full table size 715 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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