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Sample GSM474309 Query DataSets for GSM474309
Status Public on Jan 30, 2010
Title STZ2
Sample type RNA
Source name STZ-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: Streptozotocin
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337002_B
Replicate 2
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 75.38761 0.05012531
ILMN_1212612 539.0836 0
ILMN_1212619 176.3684 0
ILMN_1212628 58.19477 0.2857143
ILMN_1212632 86.89543 0.02005013
ILMN_1212636 1353.23 0
ILMN_1212637 1398.022 0
ILMN_1212645 437.7596 0
ILMN_1212648 311.0346 0
ILMN_1212653 197.3004 0
ILMN_1212672 142.5874 0
ILMN_1212682 79.059 0.03508772
ILMN_1212683 49.55278 0.6691729
ILMN_1212685 55.81714 0.3546366
ILMN_1212692 59.89223 0.2406015
ILMN_1212693 76.15224 0.04761905
ILMN_1212695 93.26896 0.01002506
ILMN_1212698 44.69592 0.914787
ILMN_1212702 1436.335 0
ILMN_1212703 124.9535 0

Total number of rows: 25697

Table truncated, full table size 717 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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