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Sample GSM474310 Query DataSets for GSM474310
Status Public on Jan 30, 2010
Title STZ3
Sample type RNA
 
Source name STZ-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: Streptozotocin
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337002_C
Replicate 3
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 77.9203 0.03007519
ILMN_1212612 633.82 0
ILMN_1212619 171.1699 0
ILMN_1212628 51.99186 0.377193
ILMN_1212632 77.47748 0.03132832
ILMN_1212636 1384.227 0
ILMN_1212637 1564.225 0
ILMN_1212645 554.8851 0
ILMN_1212648 291.1709 0
ILMN_1212653 214.097 0
ILMN_1212672 145.7488 0
ILMN_1212682 77.48798 0.03132832
ILMN_1212683 49.41807 0.4749373
ILMN_1212685 47.12794 0.6165413
ILMN_1212692 57.27826 0.226817
ILMN_1212693 91.22382 0.007518797
ILMN_1212695 96.24873 0.003759399
ILMN_1212698 41.4171 0.9010025
ILMN_1212702 3502.209 0
ILMN_1212703 113.5036 0.002506266

Total number of rows: 25697

Table truncated, full table size 728 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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