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Sample GSM474311 Query DataSets for GSM474311
Status Public on Jan 30, 2010
Title STZ4
Sample type RNA
 
Source name STZ-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: Streptozotocin
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337002_D
Replicate 4
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 84.64423 0.01378446
ILMN_1212612 690.7473 0
ILMN_1212619 182.8399 0
ILMN_1212628 49.01991 0.6240602
ILMN_1212632 108.6732 0
ILMN_1212636 1370.198 0
ILMN_1212637 1289.831 0
ILMN_1212645 447.6481 0
ILMN_1212648 346.5078 0
ILMN_1212653 149.5381 0
ILMN_1212672 158.8066 0
ILMN_1212682 79.85448 0.02756892
ILMN_1212683 50.08527 0.5676692
ILMN_1212685 49.34387 0.6115288
ILMN_1212692 61.12674 0.1679198
ILMN_1212693 78.59737 0.03258145
ILMN_1212695 77.67907 0.03383459
ILMN_1212698 47.26358 0.7330827
ILMN_1212702 3550.623 0
ILMN_1212703 137.0222 0

Total number of rows: 25697

Table truncated, full table size 715 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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