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Sample GSM474312 Query DataSets for GSM474312
Status Public on Jan 30, 2010
Title STZ5
Sample type RNA
 
Source name STZ-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: Streptozotocin
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337002_E
Replicate 5
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 74.93157 0.07142857
ILMN_1212612 615.52 0
ILMN_1212619 131.3722 0.001253133
ILMN_1212628 53.51757 0.585213
ILMN_1212632 97.74545 0.006265664
ILMN_1212636 1187.056 0
ILMN_1212637 1375.894 0
ILMN_1212645 408.0468 0
ILMN_1212648 357.4978 0
ILMN_1212653 209.7103 0
ILMN_1212672 183.4572 0
ILMN_1212682 86.80669 0.02005013
ILMN_1212683 43.86874 0.9849624
ILMN_1212685 52.47766 0.6340852
ILMN_1212692 74.34088 0.07894737
ILMN_1212693 79.45313 0.04511278
ILMN_1212695 89.89452 0.01629073
ILMN_1212698 52.45972 0.6353384
ILMN_1212702 2633.77 0
ILMN_1212703 149.2711 0.001253133

Total number of rows: 25697

Table truncated, full table size 735 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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