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Sample GSM476602 Query DataSets for GSM476602
Status Public on Dec 07, 2009
Title Liver_thiamine-treated_51week_rep1
Sample type RNA
 
Source name liver, thiamine-treated, 51week
Organism Rattus norvegicus
Characteristics strain: Otsuka Long-Evans Tokushima Fatty (OLETF) rats
gender: male
age: 55 weeks
tissue: liver
intervention: 0.2% thiamine containing water free access for 51 weeks
Treatment protocol The animal protocols were approved by the Institutional Animal Care and Use Committee of Osaka University of Pharmaceutical Sciences. Otsuka Long-Evans Tokushima Fatty (OLETF) male rats at 4 weeks of age were kindly supplied by the Tokushima Research Institute, Otsuka Pharmaceutical (Tokushima, Japan). OLETF rats were randomly divided into 2 groups of 8 each: untreated control and thiamine-treated animals. The latter group received 2 g thiamine/L in their drinking water. Rats were housed in standard cages (2 rats per cage) with free access to water and standard chow, unless noted otherwise. Cages were kept in temperature-controlled animal quarters (21°C) with a 0600-1800 light: 1800-0600 dark cycle, which was maintained throughout the experimental period. All animals were provided standard rodent chow (NMF, Oriental Yeast Co., Tokyo, Japan). Cages were changed at the beginning of each week and body weights were measured between 0800 and 1000. Body weight, food, and water intake were measured weekly throughout the investigation.
The control and treated rats were sacrificed at 55 weeks of age (thiamine treatments for 51 weeks; n = 8 per group). After 16 h of fasting, a rat was anesthetized with pentobarbital (50 mg/Kg), and an indwelling catheter was inserted in the right carotid artery. From exsanguinated animals, samples of liver were removed, and rinsed in ice-cold saline. Parts of liver were placed in RNAlater® (Ambion, Austin, TX) and stored at -80ºC, until further analysis. Individual samples were run on separate microarrays (n = 2, for both thiamine-treated and control groups); no samples were pooled.
Extracted molecule total RNA
Extraction protocol QIAGEN RNeasy mini kit was used.
Label Cy5
Label protocol We followed manufacturer's protocol.
http://www.appliedmicroarrays.com/pdf/codelink_bioarray_processing_protocol.pdf
 
Hybridization protocol We followed manufacturer's protocol.
http://www.appliedmicroarrays.com/pdf/codelink_bioarray_processing_protocol.pdf
Scan protocol We followed manufacturer's protocol, and used GenePix 4000B.
http://www.appliedmicroarrays.com/pdf/codelink_bioarray_processing_protocol.pdf
Description We followed manufacturer's protocol.
Data processing CodeLink Expression Analysis v5.0 software, Quantile normalization
 
Submission date Dec 01, 2009
Last update date Jun 04, 2010
Contact name Takao Tanaka
E-mail(s) t-tanaka@gly.oups.ac.jp
Organization name Osaka University of Pharmaceutical Sciences
Street address 4-20-1 Nasahara
City Takatsuki
State/province Osaka
ZIP/Postal code 569-1094
Country Japan
 
Platform ID GPL2896
Series (1)
GSE19292 Thiamine supplementation prevents obesity and obesity-associated metabolic disorders in OLETF rats.

Data table header descriptions
ID_REF
VALUE Per Array Normalized intensity (Quantile)
Per Gene Normalized intensity Per Gene Normalized intensity (Median centering)
Quality Flag Quality flag

Data table
ID_REF VALUE Per Gene Normalized intensity Quality Flag
1001 11492.78077 -0.06373 G
1002 136.1366 -0.25106 G
1004 349.74707 -0.10062 G
1005 4646.71483 -0.09983 G
1006 2241.776 -0.3048 G
1007 11168.5354 -0.03604 G
1008 10638.7632 -0.18532 G
1009 769.1339 -0.05512 G
1010 42.41548 -0.76374 L
1011 212.79737 -0.04277 G
1012 560.35582 0.08754 G
1013 2334.88582 -0.08333 G
1014 10812.33177 -0.03203 G
1015 10695.38743 -0.04006 G
1016 114.17522 -0.21301 G
1017 100.04977 0.35922 G
1018 182.86265 0.03273 G
1019 22.84478 -0.03552 L
1020 2689.7788 -0.08078 G
1021 11474.3777 -0.01991 G

Total number of rows: 35129

Table truncated, full table size 909 Kbytes.




Supplementary file Size Download File type/resource
GSM476602.TXT.gz 941.7 Kb (ftp)(http) TXT
Processed data included within Sample table

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