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Status
Public on Apr 09, 2005
Title
Low HIV-1 infection of human PBMCs in vitro, with N. gonorrheae (2)
Sample type
RNA
Source name
Peripheral blood mononuclear cells (PBMCs)
Organism
Homo sapiens
Extracted molecule
total RNA
Description
We used Affymetrix U133A 2.0 chips to measure RNA expression levels in human PBMCs that were infected in vitro with a dosage series of HIV-1 (Bal) for 11d, followed by 6hr stimulation with N. gonorrheae.
Submission date
Apr 07, 2005
Last update date
May 27, 2005
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE2505
HIV-1 burden influences host response to co-infection with Neisseria gonorrhoeae in vitro
Data table header descriptions
ID_REF
VALUE
Scaled intensity values
DETECTION P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
U_S_Ave
Average of unscaled, smoothed data from the low HIV-1 pair
Data table
ID_REF
VALUE
DETECTION P-VALUE
ABS_CALL
U_S_Ave
1007_s_at
228
0.014937
P
41.45
1053_at
346.1
0.000562
P
63.1
117_at
52.7
0.397994
A
27.15
121_at
425.7
0.031336
P
64.7
1255_g_at
4.2
0.892699
A
20.5
1294_at
1694
0.000219
P
186.25
1316_at
26.8
0.397994
A
22.4
1320_at
40.5
0.660442
A
23
1405_i_at
33106.2
0.000491
P
3498.2
1431_at
23.6
0.397994
A
21.95
1438_at
11.8
0.749276
A
21.2
1487_at
727.9
0.031336
P
100.7
1494_f_at
136.9
0.175989
A
32.4
1598_g_at
188.2
0.267463
A
43.7
160020_at
303.7
0.035163
P
46.15
1729_at
1366.4
0.000562
P
186.65
177_at
8.1
0.901946
A
22.3
1773_at
5.3
0.824051
A
22.65
179_at
159.4
0.5
A
37.55
1861_at
300.3
0.002617
P
49.75
Total number of rows: 22277 Table truncated, full table size 711 Kbytes .Supplementary data files not provided