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Status
Public on Apr 09, 2005
Title
High HIV-1 infection of human PBMCs in vitro, without N. gonorrheae (1)
Sample type
RNA
Source name
Peripheral blood mononuclear cells (PBMCs)
Organism
Homo sapiens
Extracted molecule
total RNA
Description
We used Affymetrix U133A 2.0 chips to measure RNA expression levels in human PBMCs that were infected in vitro with a dosage series of HIV-1 (Bal) for 11d, followed by 6hr stimulation with N. gonorrheae.
Submission date
Apr 07, 2005
Last update date
May 27, 2005
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE2505
HIV-1 burden influences host response to co-infection with Neisseria gonorrhoeae in vitro
Data table header descriptions
ID_REF
VALUE
Scaled intensity values
DETECTION P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
U_S_Ave
Average of unscaled, smoothed data from the high HIV-1 pair
Data table
ID_REF
VALUE
DETECTION P-VALUE
ABS_CALL
U_S_Ave
1007_s_at
138.8
0.006532
P
49.95
1053_at
463.8
0.001892
P
127.45
117_at
16.9
0.5
A
26.95
121_at
278.7
0.05447
M
73.7
1255_g_at
37.9
0.218983
A
24.35
1294_at
831.4
0.000266
P
177
1316_at
45.2
0.021866
P
25.1
1320_at
11.6
0.795978
A
21.85
1405_i_at
19092.1
0.000491
P
3810.5
1431_at
22.2
0.162935
A
23.85
1438_at
23.9
0.660442
A
23.1
1487_at
501
0.031336
P
121.3
1494_f_at
84.3
0.138765
A
31.7
1598_g_at
124.6
0.302547
A
54.75
160020_at
116.5
0.024711
P
41.4
1729_at
917.5
0.000562
P
204.85
177_at
38.2
0.189687
A
25.25
1773_at
69
0.284747
A
34.05
179_at
136.6
0.5
A
50.65
1861_at
204.8
0.003067
P
62.45
Total number of rows: 22277 Table truncated, full table size 713 Kbytes .Supplementary data files not provided