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Sample GSM480067 Query DataSets for GSM480067
Status Public on Dec 31, 2012
Title 3dpf_eye_rep1
Sample type RNA
Source name Wild type whole eye on 3dpf
Organism Danio rerio
Characteristics age: 3dpf
tissue: eye
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Qiashredder columns and the RNeasy Minikit (Qiagen, Hilden, Germany) in an RNase-free environment.
Label Biotin
Label protocol Total RNA were labeled by Affymetrix GeneChip Two-Cycle Target Labeling protocol.
Hybridization protocol Hybridization, washing and staining were done according to a standard procedure from Affymetrix.
Scan protocol Scanning was done according to a standard procedure from Affymetrix.
Description Eyes from 3dpf zebrafish embryo, replicate 1
Data processing The signal intensity of the microarray was normalized and summarized using the Bioconductor package, gcrma, using default setting.
Submission date Dec 04, 2009
Last update date Dec 31, 2012
Contact name Breandan Kennedy
Organization name UCD Conway Institute, University College Dublin
Department UCD School of Biomolecular and Biomedical Science
Lab Kennedy Lab
Street address Belfield
City Dublin
ZIP/Postal code Dublin 4
Country Ireland
Platform ID GPL1319
Series (1)
GSE19320 Zebrafish early eye development

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE Log2 signal intensity normalized and summarized using gcrma with default setting

Data table
AFFX-BioB-3_at 5.33807920899911
AFFX-BioB-5_at 5.58709666619916
AFFX-BioB-M_at 6.41214145109357
AFFX-BioC-3_at 4.55388996505726
AFFX-BioC-5_at 5.61514877946986
AFFX-BioDn-3_at 9.72746721590084
AFFX-BioDn-5_at 9.55464612125916
AFFX-CreX-3_at 13.311759187019
AFFX-CreX-5_at 12.3643162455424
AFFX-DapX-3_at 8.57670747333557
AFFX-DapX-5_at 3.06609629723430
AFFX-DapX-M_at 7.80159415415012
AFFX-Dr-AB076373-1_at 1.90414605080586
AFFX-Dr-AF292559-1_at 1.75342257731844
AFFX-Dr-AF292559-2_s_at 3.56511754338938
AFFX-Dr-AF292559-3_s_at 2.85629073731194
AFFX-Dr-AF292559-4_s_at 2.25495944190376
AFFX-Dr-AF292560-1_s_at 2.73713881993646
AFFX-Dr-AF298789-1_at 1.84576656025258
AFFX-Dr-AF323980-1_at 2.20271708008030

Total number of rows: 15617

Table truncated, full table size 513 Kbytes.

Supplementary file Size Download File type/resource
GSM480067_S0164F003.CEL.gz 2.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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