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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 10, 2010 |
| Title |
siControl |
| Sample type |
SRA |
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| Source name |
hMSC cells mock-depleted using a control siRNA
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| Organism |
Homo sapiens |
| Characteristics |
cell type: hMSC cells
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
polyA+ RNA isolated from hMSC cells transfected with control and targeting siRNAs
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina Genome Analyzer |
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| Description |
RNA-Seq performed on polyadenylated RNA
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| Data processing |
The sequence reads were aligned to human genomic sequence (NCBI Genome Assembly Build #36) using Bowtie (Langmead et al., Genome Biol. 2009 10).
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| Submission date |
Dec 08, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Qun Pan |
| E-mail(s) |
qun.pan@utoronto.ca
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| Organization name |
University of Toronto
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| Street address |
160 College St.
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| City |
Toronto |
| ZIP/Postal code |
M5S 3E1 |
| Country |
Canada |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE19373 |
Regulation of alternative splicing by histone modifications |
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| Relations |
| SRA |
SRX016560 |
| BioSample |
SAMN00008678 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM480870_siControl_s_6_tag_fa_bowtie.txt.gz |
267.6 Mb |
(ftp)(http) |
TXT |
| GSM480870_siControl_s_7_tag_fa_bowtie.txt.gz |
266.5 Mb |
(ftp)(http) |
TXT |
| GSM480870_siControl_s_8_tag_fa_bowtie.txt.gz |
259.8 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
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