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Status |
Public on Feb 10, 2010 |
Title |
siSETD2 |
Sample type |
SRA |
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Source name |
hMSC cells depleted of SETD2 using specific siRNA
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Organism |
Homo sapiens |
Characteristics |
cell type: hMSC cells
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Extracted molecule |
polyA RNA |
Extraction protocol |
polyA+ RNA isolated from hMSC cells transfected with control and targeting siRNAs
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
size fractionation |
Instrument model |
Illumina Genome Analyzer |
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Description |
RNA-Seq performed on polyadenylated RNA
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Data processing |
The sequence reads were aligned to human genomic sequence (NCBI Genome Assembly Build #36) using Bowtie (Langmead et al., Genome Biol. 2009 10).
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Submission date |
Dec 08, 2009 |
Last update date |
May 15, 2019 |
Contact name |
Qun Pan |
E-mail(s) |
qun.pan@utoronto.ca
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Organization name |
University of Toronto
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Street address |
160 College St.
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City |
Toronto |
ZIP/Postal code |
M5S 3E1 |
Country |
Canada |
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Platform ID |
GPL9052 |
Series (1) |
GSE19373 |
Regulation of alternative splicing by histone modifications |
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Relations |
SRA |
SRX016563 |
BioSample |
SAMN00008681 |
Supplementary file |
Size |
Download |
File type/resource |
GSM480873_siSETD2_s_6_tag_fa_bowtie.txt.gz |
294.0 Mb |
(ftp)(http) |
TXT |
GSM480873_siSETD2_s_7_tag_fa_bowtie.txt.gz |
285.8 Mb |
(ftp)(http) |
TXT |
GSM480873_siSETD2_s_8_tag_fa_bowtie.txt.gz |
282.2 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Processed data provided as supplementary file |
Raw data are available in SRA |
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