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Sample GSM480873 Query DataSets for GSM480873
Status Public on Feb 10, 2010
Title siSETD2
Sample type SRA
 
Source name hMSC cells depleted of SETD2 using specific siRNA
Organism Homo sapiens
Characteristics cell type: hMSC cells
Extracted molecule polyA RNA
Extraction protocol polyA+ RNA isolated from hMSC cells transfected with control and targeting siRNAs
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description RNA-Seq performed on polyadenylated RNA
Data processing The sequence reads were aligned to human genomic sequence (NCBI Genome Assembly Build #36) using Bowtie (Langmead et al., Genome Biol. 2009 10).
 
Submission date Dec 08, 2009
Last update date May 15, 2019
Contact name Qun Pan
E-mail(s) qun.pan@utoronto.ca
Organization name University of Toronto
Street address 160 College St.
City Toronto
ZIP/Postal code M5S 3E1
Country Canada
 
Platform ID GPL9052
Series (1)
GSE19373 Regulation of alternative splicing by histone modifications
Relations
SRA SRX016563
BioSample SAMN00008681

Supplementary file Size Download File type/resource
GSM480873_siSETD2_s_6_tag_fa_bowtie.txt.gz 294.0 Mb (ftp)(http) TXT
GSM480873_siSETD2_s_7_tag_fa_bowtie.txt.gz 285.8 Mb (ftp)(http) TXT
GSM480873_siSETD2_s_8_tag_fa_bowtie.txt.gz 282.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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