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Sample GSM48353 Query DataSets for GSM48353
Status Public on Apr 30, 2005
Title Bovine granulosa cells from cohort follicles
Sample type SAGE
Anchor NlaIII
Tag Count 50844
Tag Length 10
 
Source name Bovine granulosa cells
Organism Bos taurus
Extracted molecule total RNA
 
Description Granulosa cells harvested from largest cohort follicles growing in the first follicle wave of the estrous cycle. Follicles were dissected from ovaries following slaughter of 4 Holstein cows at 1.3 days after wave emergence. Total RNA extracted from granulosa cells of the 4 follicles was pooled for generation of the SAGE library.
Keywords = Bovine Reproduction
Keywords = Ovary
Keywords = dominant follicle selection
Keywords = Granulosa cell
 
Submission date Apr 18, 2005
Last update date Nov 19, 2008
Contact name Paul Baker
E-mail(s) pbaker@vet.gla.ac.uk
Phone +441413303108
Fax +441413305797
Organization name University of Glasgow
Department Faculty of Veterinary Medicine
Lab Reproductive Biology Group
Street address Bearsden Road
City Glasgow
ZIP/Postal code G61 1QH
Country United Kingdom
 
Platform ID GPL223
Series (1)
GSE2598 Granulosa cell gene expression profiling of bovine cohort, dominant and subordinate follicles

Data table header descriptions
TAG Tag Sequence
COUNT Number of times tag sequenced
TPM tags per million

Data table
TAG COUNT TPM
TTGCATTACC 813 15990.09
TTTAAGGTTT 590 11604.12
TAAATGTGCA 533 10483.05
AGGCCCCTAC 452 8889.94
TATCCACTAA 389 7650.85
CAGTCAATAT 376 7395.17
AGACAAGAGT 374 7355.83
GCCTGATGGG 272 5349.70
AAAAAAAAAA 262 5153.02
GTGGAAGTGA 262 5153.02
CTCACCAATA 254 4995.67
GGCTTTGGTC 245 4818.66
ACAACACATA 241 4739.99
GGAAAGGCGG 223 4385.96
TAAGGATCCA 221 4346.63
TGAGAACATT 214 4208.95
GGCTTCGGCT 207 4071.28
TGACACGTAT 206 4051.61
AATAAAGTGC 194 3815.59
TAGGTTGTCT 192 3776.26

Total number of rows: 15661

Table truncated, full table size 292 Kbytes.




Supplementary data files not provided

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