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Sample GSM484782 Query DataSets for GSM484782
Status Public on Dec 14, 2009
Title Control testis - postpartum development - N 3 day B
Sample type RNA
 
Source name Testis, age-matched controls, postnatal developmental series
Organism Mus musculus
Characteristics genotype/variation: WT
tissue: testis
age post partum: 3 days
testosterone dose: none
time post testosterone injection: n/a
Treatment protocol For the two rescue series, testosterone propionate was administered as a single intraperitoneal injection at 19 days post partum
Extracted molecule total RNA
Extraction protocol RNA was extracted with TRI reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description no additional information
Data processing The data were normalised using quantile normalisation with BeadStudio
 
Submission date Dec 14, 2009
Last update date Dec 14, 2009
Contact name Peter James Ellis
E-mail(s) p.j.i.ellis@kent.ac.uk
Phone 07808167834
Organization name University of Kent
Department School of Biosciences
Street address Stacey Building
City Canterbury
State/province Kent
ZIP/Postal code CT2 7NJ
Country United Kingdom
 
Platform ID GPL6887
Series (1)
GSE19453 Transcriptional profiling of luteinising hormone receptor deficient mice before and after testosterone treatment

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212602 267.4057 0
ILMN_1212603 74.27399 0.6106095
ILMN_1212605 758.3796 0
ILMN_1212607 113.6238 0
ILMN_1212612 229.1442 0
ILMN_1212614 63.85629 0.9243792
ILMN_1212619 350.1724 0
ILMN_1212623 79.97356 0.4051919
ILMN_1212625 651.941 0
ILMN_1212626 1808.151 0
ILMN_1212628 71.60951 0.7099323
ILMN_1212632 278.5204 0
ILMN_1212633 113.3276 0
ILMN_1212636 3807.476 0
ILMN_1212637 2836.447 0
ILMN_1212638 18505.17 0
ILMN_1212639 115.5737 0
ILMN_1212644 95.42847 0.1196388
ILMN_1212645 79.11761 0.4266366
ILMN_1212646 1928.207 0

Total number of rows: 45281

Table truncated, full table size 1242 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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