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Sample GSM484789 Query DataSets for GSM484789
Status Public on Dec 14, 2009
Title Control testis - postpartum development - N 27 day A
Sample type RNA
 
Source name Testis, age-matched controls, postnatal developmental series
Organism Mus musculus
Characteristics genotype/variation: WT
tissue: testis
age post partum: 27 days
testosterone dose: none
time post testosterone injection: n/a
Treatment protocol For the two rescue series, testosterone propionate was administered as a single intraperitoneal injection at 19 days post partum
Extracted molecule total RNA
Extraction protocol RNA was extracted with TRI reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description no additional information
Data processing The data were normalised using quantile normalisation with BeadStudio
 
Submission date Dec 14, 2009
Last update date Dec 14, 2009
Contact name Peter James Ellis
E-mail(s) p.j.i.ellis@kent.ac.uk
Phone 07808167834
Organization name University of Kent
Department School of Biosciences
Street address Stacey Building
City Canterbury
State/province Kent
ZIP/Postal code CT2 7NJ
Country United Kingdom
 
Platform ID GPL6887
Series (1)
GSE19453 Transcriptional profiling of luteinising hormone receptor deficient mice before and after testosterone treatment

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212602 7620.959 0
ILMN_1212603 88.33968 0.2268156
ILMN_1212605 306.0961 0
ILMN_1212607 89.80634 0.2078212
ILMN_1212612 83.5001 0.3217877
ILMN_1212614 67.6142 0.8268157
ILMN_1212619 4917.89 0
ILMN_1212623 126.116 0
ILMN_1212625 1228.242 0
ILMN_1212626 235.3241 0
ILMN_1212628 74.66718 0.5798883
ILMN_1212632 83.20264 0.3296089
ILMN_1212633 334.8574 0
ILMN_1212636 7443.356 0
ILMN_1212637 420.4408 0
ILMN_1212638 10874.51 0
ILMN_1212639 98.6581 0.1027933
ILMN_1212644 71.11696 0.7184358
ILMN_1212645 98.06552 0.1083799
ILMN_1212646 2984.664 0

Total number of rows: 45281

Table truncated, full table size 1244 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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