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Sample GSM489316 Query DataSets for GSM489316
Status Public on Sep 01, 2010
Title mesenteric arterial tree, eET-1 mouse, replicate 4, female mature
Sample type RNA
 
Source name mesenteric arterial tree, eET-1 mouse
Organism Mus musculus
Characteristics strain: C57BL/6
genome/variation: eET-1
gender: female
age: 6.6 months
tissue: mesenteric arterial tree
Extracted molecule total RNA
Extraction protocol Tissue was collected and stored in RNAlater overnight at 4°C with gentle agitation. Fat was removed from tissue in RNA later. RNA was extracted from cleaned arteries with Trizol reagent and chlorofom, followed by Qiagen RNeasy MinElute Cleanup Kit spin columns in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina Total Prep RNA amplification kit for Illumina arrays
 
Hybridization protocol standard Illumina hybridization protocol
Scan protocol standard Illumina scanning protocol
Description FEMALE MATURE 4
Data processing The data was normalised using the lumi algorithm in FlexArray analysis software (RMA background adjustment, variance stabililizing tranformation, robust splin normalization)
 
Submission date Dec 23, 2009
Last update date Feb 27, 2010
Contact name Stefania Simeone
E-mail(s) stefania.simeone@mail.mcgill.ca
Phone 514-340-8222
Organization name Lady Davis Institute for Medical Research
Department Hypertension and Vascular Research Unit
Lab Dr. Ernesto L Schiffrin
Street address 3755 Côte Ste-Catherine Road
City Montreal
State/province Quebec
ZIP/Postal code H3T 1E2
Country Canada
 
Platform ID GPL6885
Series (1)
GSE19624 Vascular gene expression in mice overexpressing human endothelin-1 targeted to the endothelium

Data table header descriptions
ID_REF
VALUE RMA, VST, robust splin normalized signal intensity

Data table
ID_REF VALUE
ILMN_1250052 8.158202
ILMN_3122480 8.032894
ILMN_2599935 8.858356
ILMN_2675543 8.002725
ILMN_2686883 8.011966
ILMN_2751818 7.997798
ILMN_2728634 8.083897
ILMN_3040515 8.000433
ILMN_2711608 7.997884
ILMN_1232875 8.303311
ILMN_1258507 8.022578
ILMN_2746142 8.010653
ILMN_1252690 8.028786
ILMN_2655499 7.990339
ILMN_1252870 8.062244
ILMN_1248179 7.999501
ILMN_2649955 8.287013
ILMN_2628708 8.160547
ILMN_3024781 7.991453
ILMN_2705628 8.128733

Total number of rows: 25697

Table truncated, full table size 549 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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