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Sample GSM499489 Query DataSets for GSM499489
Status Public on Nov 14, 2010
Title ICN 3-5, DN rep 2
Sample type RNA
 
Source name Day 6 embryoid body
Organism Mus musculus
Characteristics strain: Ainv15
age: Day 6
tissue: sorted cells from embryoid body
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description ICN3-5 DN_0808
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jan 21, 2010
Last update date Jan 21, 2010
Contact name Il-Ho Jang
E-mail(s) ilho_jang@student.hms.harvard.edu
Organization name Children's Hospital Boston
Department Hematology/Oncology
Lab Geoge Daley's lab
Street address Karp Bld, rm 7004, 1 Blackfan circle
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL6885
Series (1)
GSE19951 Gene expression analysis of murine day 6 embryoid bodies (EBs ) with or without Notch1 (ICN1) induction.

Data table header descriptions
ID_REF
VALUE quantile normalized
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
ILMN_1248788 48.0365 0.4385965
ILMN_2707227 64.32509 0.02882206
ILMN_2896528 1090.313 0
ILMN_2721178 217.8562 0
ILMN_1227723 206.1895 0
ILMN_3033922 267.4993 0
ILMN_3092673 1156.409 0
ILMN_2730714 1338.422 0
ILMN_3162224 821.4532 0
ILMN_2816356 91.95552 0.002506266
ILMN_2808939 566.8361 0
ILMN_2634564 433.3727 0
ILMN_1216623 561.0578 0
ILMN_1215157 692.796 0
ILMN_1228777 50.3983 0.3045113
ILMN_2737647 47.43978 0.4774436
ILMN_1216425 46.74839 0.5488722
ILMN_2734484 299.9385 0
ILMN_2652961 44.67857 0.6967419
ILMN_2952292 80.24092 0.005012531

Total number of rows: 25697

Table truncated, full table size 751 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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