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Sample GSM500978 Query DataSets for GSM500978
Status Public on Jan 23, 2011
Title gPSr line 3
Sample type RNA
Source name germ Pluripotent Stem cells from OG2-ROSA
Organism Mus musculus
Characteristics strain: C57BL6 x 129sv
genome/variation: Oct4-GFP x Lacz transgenic
cell type: germline-derived pluripotent stem (gPS) cells
potency: Pluripotent
Extracted molecule total RNA
Extraction protocol 400 ng of total DNA-free RNA was used as input for labelled cRNA synthesis (Illumina TotalPrep RNA Amplification Kit - Ambion) following the manufacturer's instructions (IVT: 12h).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description cell line 3
Data processing The bead intensities were mapped to gene information using BeadStudio 3.2 (Illumina), background correction was perform using the Affymetrix Robust Multi-array Analysis (RMA) background correction model, variance stabilization was performed using the log2 scaling and gene expression normalization was calculated with the quantile method implemented in the lumi package of R-Bioconductor.
Submission date Jan 25, 2010
Last update date Jan 23, 2011
Contact name Marcos J Ara├║zo-Bravo
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bioinformatics
Street address Rontgenstr. 20
City Muenster
ZIP/Postal code 48149
Country Germany
Platform ID GPL6885
Series (1)
GSE20031 Generation of Autologous Pluripotent Stem Cells from Adult Testis Biopsy

Data table header descriptions
VALUE log2 quantile normalized signal intensity

Data table
ILMN_1212607 5.382418
ILMN_1212612 2.895637
ILMN_1212619 5.932158
ILMN_1212628 2.276751
ILMN_1212632 5.759495
ILMN_1212636 11.567705
ILMN_1212637 8.833046
ILMN_1212645 2.174400
ILMN_1212648 8.068444
ILMN_1212653 3.893931
ILMN_1212672 8.885485
ILMN_1212682 3.441240
ILMN_1212683 2.548128
ILMN_1212685 2.821043
ILMN_1212692 8.149752
ILMN_1212693 3.284281
ILMN_1212695 2.244699
ILMN_1212698 2.446149
ILMN_1212702 2.635600
ILMN_1212703 6.271136

Total number of rows: 25697

Table truncated, full table size 554 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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