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Sample GSM5028721 Query DataSets for GSM5028721
Status Public on Jan 21, 2021
Title FK-L2-2
Sample type SRA
 
Source name rabbits liver tissue
Organism Oryctolagus cuniculus
Characteristics tissue: liver
disease state: rabbit model of hereditary tyrosinemia type I (HT1)
Extracted molecule total RNA
Extraction protocol The livers of treated rabbits' were trypsinized and collected, and total mRNA was extracted using TRIzol reagent
The TruSeq RNA Sample Preparation kit (Illumina) was used to construct RNA-seq libraries
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing High-throughput sequencing was performed on the llumina NovaSeq .
Trimmed reads were obtained by removing adapter sequences, and reads with low complexity or of low quality were removed.
quality filtered reads were mapped to the rabbit reference genome using Salmon 0.14.1
Genome_build: oryCun2
Supplementary_files_format_and_content: comma-delimited csv files include Raw reads counts of each Sample ...
 
Submission date Jan 21, 2021
Last update date Jan 22, 2021
Contact name Shixue Gou
Organization name GUANGZHOU INSTITUTES OF BIOMEDICINE AND HEALTH,CHINESE ACADEMY OF SCIENCES
Street address No. 190, Kaiyuan Avenue, Huangpu District, Guangzhou
City Guangzhou
ZIP/Postal code 510530
Country China
 
Platform ID GPL26786
Series (2)
GSE142722 CRISPR/Cas9-mediated gene correction in newborn rabbits with hereditary tyrosinemia type I
GSE142782 CRISPR/Cas9-mediated gene correction in newborn rabbits with hereditary tyrosinemia type I [RNA-Seq]
Relations
BioSample SAMN17441885
SRA SRX9908720

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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