|
| Status |
Public on Jun 01, 2011 |
| Title |
MitoPLD-/- 10 dpp small RNA |
| Sample type |
SRA |
| |
|
| Source name |
10 dpp testes
|
| Organism |
Mus musculus |
| Characteristics |
genotype/variation: MitoPLD-/-
|
| Extracted molecule |
total RNA |
| Extraction protocol |
small RNA ranging from 20 nt to 40 nt were gel purified. Libraries are prepared according to small RNA Sample prep kit (Illumina).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Description |
small RNA cloning by length
|
| Data processing |
small RNAs were mapped to the genome (UCSC 2007, mm9), and mapped sequences were annotated.
|
| |
|
| Submission date |
Feb 14, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Toshiaki Watanabe |
| E-mail(s) |
toshwatatoshiakiwatanabe@gmail.com
|
| Phone |
81-55-981-6796
|
| Organization name |
Yale University
|
| Street address |
10 Amistad
|
| City |
NewHaven |
| State/province |
CT |
| ZIP/Postal code |
06511 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (1) |
| GSE20327 |
Analysis of small RNAs in piRNA pathway mutant mouse testes |
|
| Relations |
| SRA |
SRX018863 |
| BioSample |
SAMN00014275 |
