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Sample GSM510448 Query DataSets for GSM510448
Status Public on Apr 26, 2010
Title newborn_rep4
Sample type SRA
 
Source name newborn
Organism Mus musculus
Characteristics tissue: whole newborn
molecule: small RNA
Extracted molecule total RNA
Extraction protocol The small RNA cDNA libraries were made as described (Grimson et al. 2008), except for the 3' adaptor ligation, which was 5' adenylated pTCGTATGCCGTCTTCTGCTTGidT. For a detailed protocol, see http://web.wi.mit.edu/bartel/pub/protocols.html.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description sample name: FC4004.5
Data processing Small RNA sequences 16-27 nt long are provided with the number of reads for each unique sequence. Small RNA 5p ends were observed as the 5p end of the Illumina read. Small RNA 3p ends were determined using matches to ligated linker sequences.
 
Submission date Feb 17, 2010
Last update date May 15, 2019
Contact name H. Rosaria Chiang
Organization name MIT/Whitehad Institute
Department Biology
Lab Bartel
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9185
Series (1)
GSE20384 Mammalian microRNAs: Experimental evaluation of novel and previously annotated genes
Relations
SRA SRX017760
BioSample SAMN00010168

Data table header descriptions
SEQUENCE
COUNT No_of_reads

Data table
SEQUENCE COUNT
GCACATAATGGTTTGTGGA 1
TCACAGTGAACCGGTCTCTTTAAA 1
TGAGGTAGTAGTTTGTGCTGTTG 6
GAGTCTAACGCGTGCG 1
TGAGGTAGTAGTTTGTGCTGTTA 155
GTCTCTCTCTGTGTCCAGC 1
AAAAACTCGAATGACCA 1
TCTTGAAAATCCGGGGGAGA 1
TGGTCTTCGGGGCCCTGG 1
TTTTTGAGGTGCCGCTCGTGCAGCGCT 1
TCGGAACCATCCTCTGCTACCA 1
AAATAGCAGCACGTAAATACTGGGG 1
TTGTTTGCGAGAGGACCCG 1
GTTTTTCCGCTCCCGACCC 1
TCTGCCTCTGCCTCTCCATAGT 1
AGGTAGTAGGTTGTATGGTT 1
AAAGAAGTCTGCACACTGGTTAA 1
CGGTGGTTTTACCCTATGGTAG 1
TGGCTCAGTTCAGCAGGAATAG 1
AAACACTCCTCCCCTCCCGTCTTGT 1

Total number of rows: 13832

Table truncated, full table size 332 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA

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