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Sample GSM512115 Query DataSets for GSM512115
Status Public on Oct 02, 2010
Title submandibular gland knockout rep2A
Sample type RNA
Source name mouse submandibular gland
Organism Mus musculus
Characteristics strain: C57BL/6
gender: female
age: 2 months
tissue: submandibular gland
genotype: Car6 -/-
Extracted molecule total RNA
Extraction protocol Total RNAs were purified using the RNeasy Mini Kit (Qiagen, Basel, Switzerland). On-column DNase digestion was performed during RNA purification process. RNA concentrations, A260/280, and A260/230 ratios were determined using the ND-1000 spectrophotometer (Nanodrop Technologies, Wilmington, USA).
Label Biotin
Label protocol Using Illumina TotalPrep RNA Amplification kit (#IL1791, Ambion), following the manufacturer's protocol. Input amount: 300ng of total RNA. Incubation of labeling reaction: 16h.
Hybridization protocol 750 ng of each sample was hybridized to Illumina´s Sentrix® MouseRef-8 v2 BeadChip, at 58 degree for 18 h
Scan protocol Chips were scanned with Illumina BeadArray Reader v. (Factor=1.52, PMT=552, Filter=100%)
Description n/a
Data processing Array data were normalized with Chipster version 1.3.0 using the quantile normalization method
Submission date Feb 19, 2010
Last update date Oct 02, 2010
Contact name Pei-wen Pan
Organization name Institute of Medical Technology, University of Tampere
Street address Biokatu 6
City Tampere
ZIP/Postal code 33520
Country Finland
Platform ID GPL6885
Series (1)
GSE20423 Gene expression profiling in the submandibular gland, stomach, and duodenum of CAVI-deficient mice

Data table header descriptions
VALUE quantile normalization
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1250052 5.91 0.2969925
ILMN_3122480 5.76 0.70802
ILMN_2599935 7.23 0
ILMN_2675543 5.97 0.2067669
ILMN_2686883 5.82 0.5125313
ILMN_2751818 5.62 0.9473684
ILMN_2728634 6.21 0.03884712
ILMN_3040515 5.92 0.2844611
ILMN_2711608 6.74 0.001253133
ILMN_1232875 5.81 0.5551379
ILMN_1258507 5.67 0.8809524
ILMN_2746142 5.8 0.5839599
ILMN_1252690 6.09 0.0877193
ILMN_2655499 5.8 0.5714286
ILMN_1252870 6.22 0.03508772
ILMN_1248179 5.8 0.593985
ILMN_2649955 6.65 0.001253133
ILMN_2628708 5.84 0.462406
ILMN_3024781 5.9 0.3358396
ILMN_2705628 5.98 0.1929825

Total number of rows: 25697

Table truncated, full table size 662 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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