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Sample GSM51908

Query DataSets for GSM51908

Status

Public on Jul 19, 2005

Title

1286_RNT1_4

Sample type

RNA

Source name

Rnt1 knockout BMA64

Organism

Saccharomyces cerevisiae

Extracted molecule

total RNA

Description

Strain background is BMA64 with RNT1 gene deleted with the TRP marker Media is SD -Trp (synthetic dextrose minimal media missing tryptophan) Cells were grown until midlog and harvested at OD600=0.4; MAS5 (Statistical Algorithm) Scaling:All Probe Sets Target Signal 500;Normalization:All Probe Sets; Alpha1=0.04; Alpha2=0.06; Tau=0.015

Submission date

May 19, 2005

Last update date

May 29, 2005

Contact name

Guillaume Francois Chanfreau

E-mail(s)

guillom@chem.ucla.edu

Phone

1-310-825-4399

Organization name

UCLA

Department

Chemistry and Biochemistry

Street address

607 Charles E. Young Drive East

City

Los Angeles

State/province

ZIP/Postal code

90095-1569

Country

USA

Platform ID

GPL90

Series (1)

GSE2683

Rnt1 KO Sc and Wild-type BMA64 Sc

Data table header descriptions
ID_REF
VALUE	MAS5 SA Signal
ABS_CALL	MAS5 SA Detection
DETECTION P-VALUE	MAS5 SA Detection P-value

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MurIL2_at	4.2	A	0.99382
AFFX-MurIL10_at	2.1	A	0.969035
AFFX-MurIL4_at	8.4	A	0.963431
AFFX-MurFAS_at	17.2	A	0.922016
AFFX-BioB-5_at	267.3	P	0.000856
AFFX-BioB-M_at	383.1	P	0.00007
AFFX-BioB-3_at	352.1	P	0.000581
AFFX-BioC-5_at	449.5	P	0.000127
AFFX-BioC-3_at	518.2	P	0.00007
AFFX-BioDn-5_at	512.6	P	0.000044
AFFX-BioDn-3_at	4100.1	P	0.000044
AFFX-CreX-5_at	5511.6	P	0.000044
AFFX-CreX-3_at	8193.3	P	0.000044
AFFX-BioB-5_st	3.6	A	0.814869
AFFX-BioB-M_st	6.4	A	0.921998
AFFX-BioB-3_st	6.4	A	0.904333
AFFX-BioC-5_st	5.3	A	0.953533
AFFX-BioC-3_st	14.2	A	0.824672
AFFX-BioDn-5_st	61.4	A	0.470241
AFFX-BioDn-3_st	52.4	A	0.116113

Total number of rows: 9335

Table truncated, full table size 227 Kbytes.

Supplementary data files not provided