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Sample GSM520365 Query DataSets for GSM520365
Status Public on Sep 15, 2010
Title Liver (SAMPLE 81)
Sample type RNA
 
Source name Mouse liver
Organism Mus musculus
Characteristics gender: male
strain: M16i x MB2 F2 intercross
tissue: Liver
haplotype class: 4
scanning day: 5
scanning position: 9
age: 15 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent, following manufacturer´s protocol. Quality control was performed with Agilent 2100 Bioanalyser.
Label biotin
Label protocol Biotinilated cRNA syntheses were generated using the Ambion Total Prep RNA Amplification Kit for Illumina arrays following the manufacturer´s instructions.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 41501
Data processing The data were normalized using the Loess followed by the Robust Spline Normalization (RSN) methods with the Lumi package in R.
 
Submission date Mar 10, 2010
Last update date Mar 10, 2010
Contact name Gloria Muñoz
E-mail(s) munoz.gloria@inia.es
Phone +34-913473792
Fax +34-913474192
Organization name INIA
Department Mejora Genetica Animal
Street address Crta. Coruña km 7
City Madrid
ZIP/Postal code 28041
Country Spain
 
Platform ID GPL4234
Series (1)
GSE20724 Genome-wide expression analysis of mouse chromosome 2 in gonadal fat and liver tissues reveals a complex architecture of obesity

Data table header descriptions
ID_REF
VALUE Loess/RSN normalized signal intensity

Data table
ID_REF VALUE
102450270 7.542482527
104200035 7.604447845
100730138 7.538695959
102320427 7.368411155
102630735 7.60167292
100450435 7.594403723
101230594 7.371345332
100780541 7.460039766
104200184 7.515639013
105360286 7.587132192
103060411 7.634575657
100630193 7.399683906
105270286 7.430903415
101690685 7.413608493
100060180 7.589259381
107100563 7.481926313
100450451 7.435692871
100610092 7.423394769
104810452 12.88405288
6840019 11.02865181

Total number of rows: 46116

Table truncated, full table size 935 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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