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Sample GSM520371 Query DataSets for GSM520371
Status Public on Sep 15, 2010
Title Liver (SAMPLE 87)
Sample type RNA
 
Source name Mouse liver
Organism Mus musculus
Characteristics gender: female
strain: M16i x MB2 F2 intercross
tissue: Liver
haplotype class: 3
scanning day: 6
scanning position: 3
age: 15 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent, following manufacturer´s protocol. Quality control was performed with Agilent 2100 Bioanalyser.
Label biotin
Label protocol Biotinilated cRNA syntheses were generated using the Ambion Total Prep RNA Amplification Kit for Illumina arrays following the manufacturer´s instructions.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 33709
Data processing The data were normalized using the Loess followed by the Robust Spline Normalization (RSN) methods with the Lumi package in R.
 
Submission date Mar 10, 2010
Last update date Mar 10, 2010
Contact name Gloria Muñoz
E-mail(s) munoz.gloria@inia.es
Phone +34-913473792
Fax +34-913474192
Organization name INIA
Department Mejora Genetica Animal
Street address Crta. Coruña km 7
City Madrid
ZIP/Postal code 28041
Country Spain
 
Platform ID GPL4234
Series (1)
GSE20724 Genome-wide expression analysis of mouse chromosome 2 in gonadal fat and liver tissues reveals a complex architecture of obesity

Data table header descriptions
ID_REF
VALUE Loess/RSN normalized signal intensity

Data table
ID_REF VALUE
102450270 7.51741265
104200035 7.646849312
100730138 7.64425074
102320427 7.436074438
102630735 7.567362707
100450435 7.545994753
101230594 7.364968219
100780541 7.476361131
104200184 7.570015474
105360286 7.496920672
103060411 7.630475644
100630193 7.402918128
105270286 7.446216271
101690685 7.351143385
100060180 7.545001489
107100563 7.462383267
100450451 7.517435313
100610092 7.318733009
104810452 13.56070474
6840019 11.56067402

Total number of rows: 46116

Table truncated, full table size 935 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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