GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM52500
Query DataSets for GSM52500
Status
Public on Jun 20, 2005
Title
Human Gastric Cardia
Sample type
SAGE
Anchor
NlaIII
Tag Count
25797
Tag Length
10
Source name
Gastric Cardia
Organism
Homo sapiens
Extracted molecule
total RNA
Description
gastric cardia biopt is taken from a metaplastic Barrett's esophagus patient
Submission date
May 26, 2005
Last update date
Nov 19, 2008
Contact name
Jantine Wilhelmina Paula Maria van Baal
E-mail(s)
j.w.p.m.vanbaal-2@umcutrecht.nl
Phone
+31 88 7556279
Fax
+31 88 7555533
Organization name
University Medical Center Utrecht
Department
Gastroenterology and Hepatology
Lab
Gastroenterology and Hepatology
Street address
Heidelberglaan 100
City
Utrecht
ZIP/Postal code
3584 CX
Country
Netherlands
Platform ID
GPL4
Series (1)
GSE2769
gene expression profiles of Barrett's esophagus, squamous esophagus and gastric cardia
Data table header descriptions
TAG
COUNT
count of the tags
TPM
tags per million
Data table
TAG
COUNT
TPM
CAGTGCTTCT
3070
119006.09
TCATTCTGAA
1493
57874.95
AACCTCCCCA
600
23258.52
AAATCCTGGG
324
12559.60
TTTAGGATGA
151
5853.39
CCCATCGTCC
145
5620.81
TCAAACATTA
140
5426.99
CTGGCCCTCG
139
5388.22
CACCTAATTG
136
5271.93
GTTGTGGTTA
135
5233.17
TACCTCTGAT
125
4845.52
TAGTGCTTCT
112
4341.59
TTCATACACC
98
3798.89
TTGGTGAAGG
92
3566.31
TCTCCATACC
90
3488.78
TAGGTTGTCT
88
3411.25
GTAAAAACCA
86
3333.72
GCCAGTCTGT
85
3294.96
CTAAGACTTC
83
3217.43
AAAACATTCT
80
3101.14
Total number of rows:
8810
Table truncated, full table size
165 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
