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GEO accession:
Sample GSM52501
Query DataSets for GSM52501
Status
Public on Jun 20, 2005
Title
Human Squamous Esophagus
Sample type
SAGE
Anchor
NlaIII
Tag Count
50508
Tag Length
10
Source name
Squamous esophagus
Organism
Homo sapiens
Extracted molecule
total RNA
Description
squamous esophagus biopt is taken from a metaplastic Barrett's esophagus patient
Submission date
May 26, 2005
Last update date
Nov 19, 2008
Contact name
Jantine Wilhelmina Paula Maria van Baal
E-mail(s)
j.w.p.m.vanbaal-2@umcutrecht.nl
Phone
+31 88 7556279
Fax
+31 88 7555533
Organization name
University Medical Center Utrecht
Department
Gastroenterology and Hepatology
Lab
Gastroenterology and Hepatology
Street address
Heidelberglaan 100
City
Utrecht
ZIP/Postal code
3584 CX
Country
Netherlands
Platform ID
GPL4
Series (2)
GSE2769
gene expression profiles of Barrett's esophagus, squamous esophagus and gastric cardia
GSE5154
Squamous esophagus
Data table header descriptions
TAG
COUNT
count of the tags
TPM
tags per million
Data table
TAG
COUNT
TPM
TACCTGCAGA
2486
49219.93
TTTCCTGCTC
2210
43755.44
GTGGCCACGG
1277
25283.12
ATCCTTGCTG
1200
23758.61
AGAAAGATGT
825
16334.05
GATCTCTTGG
469
9285.66
AAAGCACAAG
450
8909.48
GGCAGAGAAG
427
8454.11
TAGGTTGTCT
368
7285.97
ATAATTCTTT
297
5880.26
TGGGGAGAGG
285
5642.67
CTGGGTTAAT
219
4335.95
TTCAATAAAA
201
3979.57
GAAAAATGGT
194
3840.98
ATGAGCTGAC
190
3761.78
GCATAATAGG
187
3702.38
TTGGTCCTCT
179
3543.99
GAGGGAGTTT
174
3445.00
TAATAAAGGT
167
3306.41
CAGCTATTTC
166
3286.61
Total number of rows:
14835
Table truncated, full table size
276 Kbytes
.
Supplementary data files not provided
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