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Sample GSM52502 Query DataSets for GSM52502
Status Public on Jun 20, 2005
Title Human Barrett's Esophagus
Sample type SAGE
Anchor NlaIII
Tag Count 46269
Tag Length 10
 
Source name Barrett's Esophagus
Organism Homo sapiens
Extracted molecule total RNA
 
Description Biopt is taken from a metaplastic Barrett's esophagus patient
 
Submission date May 26, 2005
Last update date Nov 19, 2008
Contact name Jantine Wilhelmina Paula Maria van Baal
E-mail(s) j.w.p.m.vanbaal-2@umcutrecht.nl
Phone +31 88 7556279
Fax +31 88 7555533
Organization name University Medical Center Utrecht
Department Gastroenterology and Hepatology
Lab Gastroenterology and Hepatology
Street address Heidelberglaan 100
City Utrecht
ZIP/Postal code 3584 CX
Country Netherlands
 
Platform ID GPL4
Series (2)
GSE2769 gene expression profiles of Barrett's esophagus, squamous esophagus and gastric cardia
GSE5155 Barrett's esophagus

Data table header descriptions
TAG
COUNT count of the tags
TPM tags per million

Data table
TAG COUNT TPM
TTTCCTGCTC 801 17311.81
TACCTGCAGA 752 16252.78
GTGGCCACGG 656 14177.96
ATCCTTGCTG 380 8212.84
CCCATCGTCC 349 7542.85
CTGGCCCTCG 345 7456.40
ATTTTCTAAA 327 7067.37
AGAAAGATGT 313 6764.79
CACCTAATTG 309 6678.34
TAGGTTGTCT 279 6029.96
GTTGTGGTTA 266 5748.99
GGAAGGTTTA 263 5684.15
TTCATACACC 262 5662.54
TACCTCTGAT 255 5511.25
GGCAGAGAAG 235 5078.99
TTGGTCCTCT 216 4668.35
AAGAAAGCTC 194 4192.87
GAGGGAGTTT 185 3998.36
CCTCCAGCTA 181 3911.91
GGATTTGGCC 180 3890.29

Total number of rows: 16058

Table truncated, full table size 299 Kbytes.




Supplementary data files not provided

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