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Sample GSM527278 Query DataSets for GSM527278
Status Public on Mar 23, 2011
Title dicer_ko_cortex
Sample type SRA
 
Source name cortex
Organism Mus musculus
Characteristics strain: C57BL/6
age: P21
genotype/variation: dicer ko
Treatment protocol The hippocampus and cortex were manually dissected. Total RNA was prepared with Trizol Reagent
Extracted molecule total RNA
Extraction protocol Libraries were constructed with the Illumina small RNA kit version 1.5
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description small RNA-Seq
Data processing Illumina Pipeline v1.3
 
Submission date Mar 26, 2010
Last update date May 15, 2019
Contact name Robert Blelloch
E-mail(s) blellochr@stemcell.ucsf.edu
Phone 415-476-2838
Organization name University of California, San Francisco
Street address 513 Parnassus Avenue, Campus Box #0525
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL9250
Series (1)
GSE21090 Functional non-canonical microRNAs in the mammalian hippocampus and cortex
Relations
SRA SRX018287
BioSample SAMN00010648

Data table header descriptions
SEQUENCE
COUNT small RNA count

Data table
SEQUENCE COUNT
GCTTGCTGAAGATTTCCTGAAAGACT 2
AGCATGGTTTGAAATCAGTGGTA 1
TGCAGCCTGGCAAGC 1
CAGGAGGAGAACGTGGACCCTGACT 1
TTTGAACCATCACTCGACTGTT 1
TTGTTATAGCCTTGC 1
TTCAGTGATGATTAGCTTCTGACTTT 1
CCTCTGGCTACAGCAGCTGAG 1
GTTGGACTAAATTTAGTTTGC 1
GACCCCCCGTCCTTTCCG 1
TTGTTAATAGTGAACTTGACTAGTCTTT 1
AAGACTTTGAGCTGGCATCA 1
TGGAAACATCCTGGGCTGGG 1
GGATGATCCGAACAGAGAT 1
AGAAAAAGACAGAGACAGAGAGACAGA 1
CGAATATGAAGATTATGAAGAAGA 1
ACGTGAACTGGGAAAAGCATACA 1
TAATTTTAGCTCTGAGGT 1
GATGAATAACTGAATTGCATTAGCAGT 1
GTACACCCTCTAACCTAGCGAAGGTT 1

Total number of rows: 405072

Table truncated, full table size 9675 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA

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