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Sample GSM5290350 Query DataSets for GSM5290350
Status Public on May 11, 2021
Title mPTCL#3
Sample type RNA
 
Source name PTCL from CD3KO mice injected with p53KO T cells
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: p53KO
tissue/cell type: peripheral T-cell lymphoma (PTCL)
Treatment protocol Lymphoma cells were purified by cell sorting from liver
Extracted molecule total RNA
Extraction protocol Total RNA were extract with with the Qiagen RNeasy minikit (Qiagen)
Label biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol As per manufacturer (Affymetrix)
Scan protocol The Arrays were scanned using the Gene Chip Scanner 3000. Then CEL files were generated using the Affymetrix GeneChip Command Console software (AGCC) 3.0
Description gene expression data from mPTCL#3
Data processing CHP files were processed using MAS 5.0 analysis algorithm with Affymetrix Expression Console software 1.1
 
Submission date May 11, 2021
Last update date May 11, 2021
Contact name GENESTIER Laurent
E-mail(s) laurent.genestier@inserm.fr
Organization name INSERM
Street address Faculté de Medecine Lyon Sud. 165 Chemin du petit Revoyet
City Oullins
ZIP/Postal code 69921
Country France
 
Platform ID GPL1261
Series (1)
GSE174257 Expression data from resting and activated murine T cell as well as murine peripheral T cell lymphomas

Data table header descriptions
ID_REF
VALUE MAS5 Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 841.142 P 0.000195116
AFFX-BioB-M_at 1090.92 P 4.42873e-05
AFFX-BioB-3_at 823.957 P 0.000445901
AFFX-BioC-5_at 1616.85 P 6.02111e-05
AFFX-BioC-3_at 2933.96 P 5.16732e-05
AFFX-BioDn-5_at 4170.89 P 4.42873e-05
AFFX-BioDn-3_at 6463.26 P 8.14279e-05
AFFX-CreX-5_at 19437.2 P 5.16732e-05
AFFX-CreX-3_at 20865.6 P 4.42873e-05
AFFX-DapX-5_at 384.938 P 0.000195116
AFFX-DapX-M_at 517.518 P 0.000662269
AFFX-DapX-3_at 1344.76 P 5.16732e-05
AFFX-LysX-5_at 31.6687 P 0.0284465
AFFX-LysX-M_at 71.308 P 0.036569
AFFX-LysX-3_at 316.32 P 0.000258358
AFFX-PheX-5_at 53.6753 P 0.00844047
AFFX-PheX-M_at 96.0239 P 0.000224668
AFFX-PheX-3_at 341.59 P 0.000146581
AFFX-ThrX-5_at 71.1556 P 0.0113844
AFFX-ThrX-M_at 79.4829 P 0.0032123

Total number of rows: 45101

Table truncated, full table size 1383 Kbytes.




Supplementary file Size Download File type/resource
GSM5290350_03_Mouse430_2.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM5290350_03_Mouse430_2.mas5.CHP.gz 395.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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