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Sample GSM5291047 Query DataSets for GSM5291047
Status Public on May 12, 2021
Title E15.5 Oa1-/- eyes, biological replicate 2
Sample type RNA
 
Source name E15.5 Oa1-/- Mouse Eyes
Organism Mus musculus
Characteristics sample type: E15.5 mouse eyes
Treatment protocol Eyes from six embryos from each pregnant mouse were isolated and treated as one biological sample. After enucleation, the anterior segments were dissected out and the posterior segments used for RNA extraction
Growth protocol Six pregnant females, three Oa1-/- and three WT, were sacrificed at day 15.5 days post coitum
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Ambion RNA extraction kit
Label Biotin
Label protocol Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 12.5μg of total RNA (Expression Analysis Technical Manual, Affymrtrix)
 
Hybridization protocol Hybridization was performed at 45°C for 16 hours in an Affymetrix Hybridization oven.The arrays were then washed and stained with Streptavidin Phycoerythrin in the Affymetrix Fluidics station (model 450)
Scan protocol Scanning done with the Affymetrix 7G scanner.The Affymetrix GeneChip Command Console 4.0 (AGCC) was used for controlling the system and for acquisition of array images.
Description Gene expression from E15.5 Oa1-/- mouse Eyes
Data processing Data was processed with Affymetrix MAS5 software, which includes scaling all probes to a target intensity (TGT) of 500.
 
Submission date May 11, 2021
Last update date May 12, 2021
Contact name SONIA GUHA
E-mail(s) guha@jsei.ucla.edu
Organization name UCLA
Department Ophthalmology, SEI
Street address 650 Charles E Young Dr, S
City LOS ANGELES
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL1261
Series (1)
GSE174287 Gene Expression Profile From 15 day Embryonic Mouse Eyes

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 325.593 P 8.14279e-05
AFFX-BioB-M_at 555.327 P 4.42873e-05
AFFX-BioB-3_at 352.522 P 9.4506e-05
AFFX-BioC-5_at 1030.09 P 4.42873e-05
AFFX-BioC-3_at 1474.2 P 4.42873e-05
AFFX-BioDn-5_at 2256.15 P 4.42873e-05
AFFX-BioDn-3_at 4716 P 6.02111e-05
AFFX-CreX-5_at 16272.3 P 4.42873e-05
AFFX-CreX-3_at 17538 P 4.42873e-05
AFFX-DapX-5_at 13.4045 A 0.227636
AFFX-DapX-M_at 14.725 A 0.275094
AFFX-DapX-3_at 1.83755 A 0.969024
AFFX-LysX-5_at 1.56657 A 0.783476
AFFX-LysX-M_at 15.9414 A 0.470241
AFFX-LysX-3_at 10.6354 A 0.250796
AFFX-PheX-5_at 13.2062 A 0.783476
AFFX-PheX-M_at 3.29605 A 0.760937
AFFX-PheX-3_at 10.6067 A 0.52976
AFFX-ThrX-5_at 20.5863 A 0.340661
AFFX-ThrX-M_at 13.0684 A 0.39692

Total number of rows: 45101

Table truncated, full table size 1394 Kbytes.




Supplementary file Size Download File type/resource
GSM5291047_T-2.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM5291047_T-2.mas5.CHP.gz 389.9 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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