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Sample GSM52918 Query DataSets for GSM52918
Status Public on Nov 23, 2005
Title A7-Lung-Met
Sample type RNA
 
Channel 1
Source name Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Autopsy patient #7 Lung metastasis from breast
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Single Sample Predictor Subtype: Basal-like
 
Submission date Jun 02, 2005
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL887
Series (1)
GSE2741 Breast Tumor's study

Data table header descriptions
ID_REF Spot Reference ID
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 .076 22575 118 30 40 8 136 44 43 15 818 120 41 130 82 87 .19 .81 Y .076
2 -1.604 22470 56 12 41 16 48 17 44 17 334 52 42 46 13 4 -1.905 .38 Y -1.604
3 -.107 22365 131 47 39 93 139 56 42 34 865 156 40 133 98 91 .016 .79 N -.107
4 -.54 22260 5748 907 39 8 4313 686 41 16 637 120 39 4147 5955 4094 -.474 .99 N -.54
5 -.584 22155 1037 514 40 8 735 346 42 16 791 156 40 706 1017 678 -.582 .98 N -.584
6 -.277 22050 69 16 39 9 67 23 43 17 711 120 41 64 29 24 -.383 .35 Y -.277
7 -.233 21945 101 21 39 9 101 33 43 16 708 120 41 97 65 55 -.147 .69 Y -.233
8 .048 21840 1839 392 39 12 1984 426 45 36 710 120 43 1907 1837 1899 .051 .99 N .048
9 -.174 21735 737 140 41 17 692 130 47 54 686 120 45 665 711 630 -.167 .96 N -.174
10 -.132 21630 98 22 40 8 101 35 43 24 704 120 41 97 60 55 -.05 .64 N -.132
11 -.67 21525 147 27 39 8 121 42 44 19 694 120 42 116 115 72 -.546 .76 N -.67
12 .561 21420 228 88 40 8 350 143 44 16 801 156 42 336 197 291 .645 .93 N .561
13 .09 21315 94 30 40 9 106 41 43 16 724 156 41 101 56 60 .152 .68 N .09
14 -.234 21210 103 22 40 8 103 34 44 16 674 120 42 99 66 56 -.144 .66 Y -.234
15 -1.62 21105 6685 1178 41 9 2354 379 44 16 710 120 42 2263 6867 2234 -1.582 .99 N -1.62
16 -.22 21000 281 47 41 10 272 66 44 15 694 120 42 261 252 216 -.133 .92 N -.22
17 -.9 20895 110 22 41 10 85 26 45 16 710 120 43 81 71 38 -.86 .58 N -.9
18 .333 20790 441 65 39 8 578 110 45 16 726 120 43 555 412 519 .349 .97 N .333
19 .061 20685 3192 702 40 12 3523 758 45 73 724 120 43 3387 3241 3381 .085 .99 Y .061
20 .207 20580 68 16 40 10 75 29 43 17 704 120 41 72 27 32 .147 .46 N .207

Total number of rows: 22575

Table truncated, full table size 1851 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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