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Sample GSM5325 Query DataSets for GSM5325
Status Public on Apr 02, 2003
Title S17-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S17-P1
mAdb experiment ID: 25413
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0591853 1 1 1 2974 1254 102 179 2684 1043 230 88 0 1.146 0.0591853
159763 0.0499933 2 1 1 3600 1051 89 33 3267 884 202 60 0 1.122 0.0499933
159764 0.2129863 3 1 1 3779 1283 88 32 2406 642 192 59 0 1.633 0.2129863
159765 0.6042263 4 1 1 3023 392 84 32 905 204 189 57 0 4.020 0.6042263
159766 -0.1163393 1 2 1 436 105 104 180 656 143 231 93 0 0.765 -0.1163393
159767 0.0366293 2 2 1 1133 400 90 34 1143 268 204 59 0 1.088 0.0366293
159768 0.0700383 3 2 1 1184 357 92 33 1107 319 197 59 0 1.175 0.0700383
159769 -0.0501223 4 2 1 1792 277 89 32 2066 408 195 58 0 0.891 -0.0501223
159770 -0.2097153 1 3 1 1003 325 101 39 1665 499 234 64 0 0.617 -0.2097153
159771 0.1682033 2 3 1 1486 618 90 34 1129 327 201 61 0 1.473 0.1682033
159772 -0.1414633 3 3 1 355 116 91 32 558 142 200 55 0 0.722 -0.1414633
159773 -0.0856573 4 3 1 539 133 86 31 729 170 189 57 0 0.821 -0.0856573
159774 0.2545483 1 4 1 3807 1517 98 35 2252 762 231 66 0 1.797 0.2545483
159775 -0.1408623 2 4 1 1846 575 90 35 2581 727 202 59 0 0.723 -0.1408623
159776 -0.1226293 3 4 1 395 102 91 32 597 150 202 61 0 0.754 -0.1226293
159777 -0.1719853 4 4 1 330 82 86 35 548 111 193 58 0 0.673 -0.1719853
159778 0.0056093 1 5 1 1110 452 98 34 1201 339 223 64 0 1.013 0.0056093
159779 -0.1067933 2 5 1 704 178 92 34 968 181 202 60 0 0.782 -0.1067933
159780 -0.3142583 3 5 1 575 207 90 32 1180 388 200 58 0 0.485 -0.3142583
159781 -0.2097153 4 5 1 305 82 87 34 541 122 195 57 0 0.617 -0.2097153

Total number of rows: 9128

Table truncated, full table size 661 Kbytes.




Supplementary data files not provided
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