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Sample GSM5333 Query DataSets for GSM5333
Status Public on Apr 02, 2003
Title S20-P2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S20-P2
mAdb experiment ID: 25422
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1287223 1 1 1 2083 692 226 105 1506 405 384 119 0 1.345 0.1287223
159763 0.1451963 2 1 1 2634 1131 252 108 1727 510 342 100 0 1.397 0.1451963
159764 -0.0385793 3 1 1 2080 491 236 113 1983 520 345 123 0 0.915 -0.0385793
159765 0.3036283 4 1 1 1574 396 180 85 859 246 296 90 0 2.012 0.3036283
159766 0.0425763 1 2 1 844 231 229 108 842 202 389 160 0 1.103 0.0425763
159767 0.0301953 2 2 1 1122 370 246 173 1002 281 338 100 0 1.072 0.0301953
159768 0.0124153 3 2 1 1368 384 247 107 1260 335 375 120 0 1.029 0.0124153
159769 0.0733523 4 2 1 2447 581 177 93 1860 331 302 89 0 1.184 0.0733523
159770 -0.1360833 1 3 1 586 232 247 101 776 209 399 126 0 0.731 -0.1360833
159771 0.1439513 2 3 1 898 311 255 116 737 213 362 98 0 1.393 0.1439513
159772 -0.0920513 3 3 1 423 174 212 134 564 136 352 143 0 0.809 -0.0920513
159773 0.0354303 4 3 1 520 201 182 90 563 182 310 95 0 1.085 0.0354303
159774 0.1367213 1 4 1 2712 695 243 101 1867 374 403 123 0 1.370 0.1367213
159775 -0.0990873 2 4 1 1423 348 253 123 1547 259 352 103 0 0.796 -0.0990873
159776 -0.0347983 3 4 1 407 200 215 96 503 211 334 109 0 0.923 -0.0347983
159777 -0.0231923 4 4 1 601 603 194 92 677 674 328 94 0 0.948 -0.0231923
159778 -0.0319843 1 5 1 705 213 250 107 813 221 415 124 0 0.929 -0.0319843
159779 0.0021663 2 5 1 736 226 251 110 743 198 351 100 0 1.005 0.0021663
159780 -0.3178553 3 5 1 522 188 239 111 831 249 353 151 0 0.481 -0.3178553
159781 -0.0457573 4 5 1 480 212 201 96 585 226 333 91 0 0.900 -0.0457573

Total number of rows: 9128

Table truncated, full table size 669 Kbytes.




Supplementary data files not provided
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