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Sample GSM5336 Query DataSets for GSM5336
Status Public on Apr 02, 2003
Title S21-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S21-M1
mAdb experiment ID: 25426
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1646503 1 1 1 4690 3378 296 99 3087 2831 388 113 0 1.461 0.1646503
159763 0.0595633 2 1 1 2554 1108 216 83 2167 1098 338 97 0 1.147 0.0595633
159764 0.3014643 3 1 1 2362 485 196 76 1298 222 327 94 0 2.002 0.3014643
159765 0.2203703 4 1 1 1587 450 258 93 1040 338 322 92 0 1.661 0.2203703
159766 0.3277673 1 2 1 4212 1893 287 93 2049 1858 393 107 0 2.127 0.3277673
159767 0.0715143 2 2 1 1325 403 223 82 1180 403 341 94 0 1.179 0.0715143
159768 -0.0245683 3 2 1 1832 374 208 81 1875 361 332 99 0 0.945 -0.0245683
159769 0.0464953 4 2 1 3369 844 271 112 2833 558 336 105 0 1.113 0.0464953
159770 0.1065313 1 3 1 2407 2831 285 104 1885 2146 395 99 0 1.278 0.1065313
159771 0.0265333 2 3 1 1916 1346 211 82 1772 1418 332 96 0 1.063 0.0265333
159772 0.0265333 3 3 1 662 287 219 78 714 234 340 96 0 1.063 0.0265333
159773 0.0591853 4 3 1 2003 863 262 92 1679 761 316 95 0 1.146 0.0591853
159774 0.2846563 1 4 1 4406 1126 275 91 2298 936 373 105 0 1.926 0.2846563
159775 -0.1140743 2 4 1 2013 878 217 86 2438 782 342 93 0 0.769 -0.1140743
159776 0.0182843 3 4 1 506 202 227 85 573 225 333 103 0 1.043 0.0182843
159777 0.0406023 4 4 1 1615 901 279 94 1412 748 320 99 0 1.098 0.0406023
159778 0.1099163 1 5 1 1555 948 268 94 1255 626 358 105 0 1.288 0.1099163
159779 -0.0840733 2 5 1 989 434 216 86 1173 424 331 94 0 0.824 -0.0840733
159780 3 5 1 273 140 238 88 401 166 347 97 -50 0.582 -0.2350773
159781 0.0390173 4 5 1 2467 971 288 118 2120 888 333 135 0 1.094 0.0390173

Total number of rows: 9128

Table truncated, full table size 669 Kbytes.




Supplementary data files not provided

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