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Sample GSM5356 Query DataSets for GSM5356
Status Public on Apr 02, 2003
Title S28-M2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S28-M2
mAdb experiment ID: 25448
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.0783143 1 1 1 1247 343 351 99 1483 520 625 157 0 0.835 -0.0783143
159763 0.0157793 2 1 1 1391 389 280 80 1294 384 437 134 0 1.037 0.0157793
159764 -0.1095793 3 1 1 2890 521 610 185 2715 883 369 112 0 0.777 -0.1095793
159765 0.6964443 4 1 1 4645 810 308 91 1077 210 379 115 0 4.971 0.6964443
159766 -0.1325333 1 2 1 960 246 362 100 1295 406 646 163 0 0.737 -0.1325333
159767 0.0870713 2 2 1 1513 242 282 92 1224 250 418 131 0 1.222 0.0870713
159768 0.1559433 3 2 1 2351 452 500 330 1426 309 392 128 0 1.432 0.1559433
159769 -0.1226293 4 2 1 1858 370 312 90 2008 392 368 115 0 0.754 -0.1226293
159770 -0.2564903 1 3 1 779 322 355 95 1266 415 654 165 0 0.554 -0.2564903
159771 -0.0136763 2 3 1 1235 270 282 87 1191 365 404 119 0 0.969 -0.0136763
159772 -0.0452753 3 3 1 898 310 308 96 884 237 360 121 0 0.901 -0.0452753
159773 -0.0752043 4 3 1 969 237 313 89 1004 263 380 122 0 0.841 -0.0752043
159774 0.0488303 1 4 1 2239 704 363 304 2006 316 665 294 0 1.119 0.0488303
159775 -0.1012753 2 4 1 1415 278 272 93 1577 344 423 123 0 0.792 -0.1012753
159776 0.1501423 3 4 1 1140 368 294 271 827 264 348 144 0 1.413 0.1501423
159777 -0.0338583 4 4 1 820 248 332 93 809 234 387 123 0 0.925 -0.0338583
159778 -0.0545313 1 5 1 892 210 355 102 1131 272 644 210 0 0.882 -0.0545313
159779 -0.0819703 2 5 1 875 228 263 85 987 241 396 121 0 0.828 -0.0819703
159780 -0.4377073 3 5 1 1105 302 279 89 2151 547 342 244 0 0.365 -0.4377073
159781 -0.1012753 4 5 1 757 145 353 158 831 178 423 127 0 0.792 -0.1012753

Total number of rows: 9128

Table truncated, full table size 667 Kbytes.




Supplementary data files not provided
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