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Sample GSM5357 Query DataSets for GSM5357
Status Public on Apr 02, 2003
Title S28-P2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S28-P2
mAdb experiment ID: 25450
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1264563 1 1 1 2096 504 227 85 1656 548 376 114 0 1.338 0.1264563
159763 0.1565493 2 1 1 1610 412 218 80 1208 347 318 94 0 1.434 0.1565493
159764 0.1195863 3 1 1 2026 492 255 84 1616 366 383 104 0 1.317 0.1195863
159765 0.9790023 4 1 1 3974 700 253 93 709 173 351 107 0 9.528 0.9790023
159766 0.0827853 1 2 1 1393 539 223 82 1284 428 398 119 0 1.210 0.0827853
159767 0.2289133 2 2 1 1626 311 218 82 1070 251 308 88 0 1.694 0.2289133
159768 0.0549963 3 2 1 1236 274 264 167 1192 204 407 114 0 1.135 0.0549963
159769 -0.0594843 4 2 1 776 201 263 91 895 213 356 103 0 0.872 -0.0594843
159770 0.0248963 1 3 1 1338 625 236 87 1334 491 380 125 0 1.059 0.0248963
159771 0.2808063 2 3 1 1595 347 227 91 962 349 305 92 0 1.909 0.2808063
159772 0.0625823 3 3 1 644 203 251 97 702 187 390 105 0 1.155 0.0625823
159773 -0.0872473 4 3 1 714 266 242 83 861 270 332 98 0 0.818 -0.0872473
159774 0.3285833 1 4 1 3361 542 234 143 1742 308 397 272 0 2.131 0.3285833
159775 0.0845763 2 4 1 1540 351 223 530 1303 279 309 1047 0 1.215 0.0845763
159776 -0.0952843 3 4 1 608 225 234 80 803 238 376 107 0 0.803 -0.0952843
159777 -0.0287243 4 4 1 499 169 251 91 590 139 347 97 0 0.936 -0.0287243
159778 0.0461053 1 5 1 1261 336 227 89 1239 309 387 109 0 1.112 0.0461053
159779 0.0670713 2 5 1 956 302 220 85 901 239 323 90 0 1.167 0.0670713
159780 -0.1180453 3 5 1 951 214 243 129 1241 262 389 125 0 0.762 -0.1180453
159781 -0.0347983 4 5 1 686 164 240 87 815 179 372 93 0 0.923 -0.0347983

Total number of rows: 9128

Table truncated, full table size 657 Kbytes.




Supplementary data files not provided
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