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Sample GSM5360 Query DataSets for GSM5360
Status Public on Apr 02, 2003
Title S29-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S29-M1
mAdb experiment ID: 25454
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0060383 1 1 1 2163 709 244 94 1881 534 496 138 0 1.014 0.0060383
159763 0.2206313 2 1 1 2790 1470 264 92 1613 359 501 125 0 1.662 0.2206313
159764 0.0806263 3 1 1 2698 889 245 83 1999 632 508 122 0 1.204 0.0806263
159765 -0.2814983 4 1 1 548 156 263 88 923 211 524 129 0 0.523 -0.2814983
159766 0.0244863 1 2 1 1006 303 243 90 1019 276 491 127 0 1.058 0.0244863
159767 0.3289913 2 2 1 2678 1535 262 91 1352 293 523 132 0 2.133 0.3289913
159768 0.0674433 3 2 1 1773 711 244 89 1450 373 492 132 0 1.168 0.0674433
159769 -0.1163393 4 2 1 1132 433 254 114 1364 449 524 132 0 0.765 -0.1163393
159770 0.0136803 1 3 1 1721 533 257 86 1528 261 490 131 0 1.032 0.0136803
159771 0.3736473 2 3 1 2308 1322 260 91 1164 277 530 132 0 2.364 0.3736473
159772 0.0043213 3 3 1 600 199 244 96 755 190 497 153 0 1.010 0.0043213
159773 -0.2724593 4 3 1 516 143 255 85 909 205 551 127 0 0.534 -0.2724593
159774 0.0576663 1 4 1 2295 894 249 106 1811 598 500 135 0 1.142 0.0576663
159775 0.0722503 2 4 1 2232 810 252 104 1756 405 529 134 0 1.181 0.0722503
159776 0.2140493 3 4 1 971 306 235 104 811 183 482 157 0 1.637 0.2140493
159777 -0.1938203 4 4 1 448 127 246 84 781 183 550 139 0 0.640 -0.1938203
159778 0.1401943 1 5 1 1351 428 253 96 1074 190 492 126 0 1.381 0.1401943
159779 0.3257213 2 5 1 1675 706 255 84 1021 213 530 129 0 2.117 0.3257213
159780 -0.0385793 3 5 1 1417 390 240 85 1447 498 506 122 0 0.915 -0.0385793
159781 -0.1972263 4 5 1 448 127 252 83 765 175 539 139 0 0.635 -0.1972263

Total number of rows: 9128

Table truncated, full table size 673 Kbytes.




Supplementary data files not provided
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