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Sample GSM5362 Query DataSets for GSM5362
Status Public on Apr 02, 2003
Title S29-M2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S29-M2
mAdb experiment ID: 25456
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0972573 1 1 1 1980 1030 263 182 1469 358 442 126 0 1.251 0.0972573
159763 -0.0083313 2 1 1 991 348 238 98 1076 260 502 173 0 0.981 -0.0083313
159764 0.0726173 3 1 1 1517 472 213 101 1303 337 478 123 0 1.182 0.0726173
159765 -0.1662163 4 1 1 555 121 223 84 908 212 544 126 0 0.682 -0.1662163
159766 0.0449323 1 2 1 991 417 266 228 938 323 449 124 0 1.109 0.0449323
159767 -0.1023733 2 2 1 660 256 245 99 887 215 494 176 0 0.790 -0.1023733
159768 -0.0017413 3 2 1 914 226 220 90 998 219 477 123 0 0.996 -0.0017413
159769 -0.0423933 4 2 1 962 314 219 85 1154 252 541 129 0 0.907 -0.0423933
159770 0.0648323 1 3 1 1437 658 278 99 1205 402 458 121 0 1.161 0.0648323
159771 0.0480533 2 3 1 864 215 237 90 906 217 486 125 0 1.117 0.0480533
159772 -0.1062383 3 3 1 463 168 215 90 728 198 491 127 0 0.783 -0.1062383
159773 -0.1999713 4 3 1 572 208 211 85 954 455 526 130 0 0.631 -0.1999713
159774 0.1714343 1 4 1 1938 419 258 113 1311 296 464 123 0 1.484 0.1714343
159775 -0.1536633 2 4 1 837 270 235 93 1130 270 489 121 0 0.702 -0.1536633
159776 -0.1384663 3 4 1 470 130 227 88 748 165 498 128 0 0.727 -0.1384663
159777 -0.0824943 4 4 1 592 219 214 87 866 220 524 129 0 0.827 -0.0824943
159778 -0.0026143 1 5 1 650 300 278 162 755 364 475 119 0 0.994 -0.0026143
159779 -0.0996333 2 5 1 546 174 225 89 790 187 488 120 0 0.795 -0.0996333
159780 -0.1505813 3 5 1 798 283 226 86 1099 260 494 124 0 0.707 -0.1505813
159781 -0.1123833 4 5 1 602 224 223 82 862 317 495 125 0 0.772 -0.1123833

Total number of rows: 9128

Table truncated, full table size 676 Kbytes.




Supplementary data files not provided
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