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Sample GSM5363 Query DataSets for GSM5363
Status Public on Apr 02, 2003
Title S29-P2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S29-P2
mAdb experiment ID: 25457
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0652063 1 1 1 2853 1101 299 110 2041 728 433 120 0 1.162 0.0652063
159763 0.0538463 2 1 1 2468 732 338 135 1922 481 545 138 0 1.132 0.0538463
159764 0.0098763 3 1 1 3692 1543 407 133 2957 969 607 137 0 1.023 0.0098763
159765 -0.1700533 4 1 1 831 304 294 116 1072 223 491 124 0 0.676 -0.1700533
159766 0.0338263 1 2 1 888 235 300 115 852 193 454 129 0 1.081 0.0338263
159767 -0.1140743 2 2 1 1096 331 348 129 1265 292 553 128 0 0.769 -0.1140743
159768 -0.0629843 3 2 1 1790 528 405 132 1782 343 610 142 0 0.865 -0.0629843
159769 -0.0772753 4 2 1 1259 495 310 118 1349 421 519 128 0 0.837 -0.0772753
159770 0.0269423 1 3 1 1453 577 288 116 1266 341 465 121 0 1.064 0.0269423
159771 0.0334243 2 3 1 1273 482 346 137 1181 257 553 130 0 1.080 0.0334243
159772 -0.1180453 3 3 1 702 215 373 137 879 183 563 137 0 0.762 -0.1180453
159773 -0.2564903 4 3 1 599 172 310 119 904 209 522 132 0 0.554 -0.2564903
159774 0.1752223 1 4 1 4058 1246 297 115 2303 491 465 126 0 1.497 0.1752223
159775 -0.1617813 2 4 1 1270 323 342 126 1527 306 541 129 0 0.689 -0.1617813
159776 0.0182843 3 4 1 903 286 353 126 929 194 543 130 0 1.043 0.0182843
159777 -0.2298853 4 4 1 532 173 309 117 780 192 503 133 0 0.589 -0.2298853
159778 -0.0624823 1 5 1 995 238 298 108 1047 198 458 127 0 0.866 -0.0624823
159779 -0.0819703 2 5 1 915 243 330 116 1036 211 519 134 0 0.828 -0.0819703
159780 -0.3018993 3 5 1 1512 654 350 125 2232 908 529 128 0 0.499 -0.3018993
159781 -0.2628073 4 5 1 562 145 285 110 836 180 465 119 0 0.546 -0.2628073

Total number of rows: 9128

Table truncated, full table size 681 Kbytes.




Supplementary data files not provided

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