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Sample GSM5365 Query DataSets for GSM5365
Status Public on Apr 02, 2003
Title S30-P2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S30-P2
mAdb experiment ID: 25460
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1274293 1 1 1 1696 1077 277 91 1358 726 294 93 0 1.341 0.1274293
159763 -0.0241093 2 1 1 2158 530 240 82 2297 534 258 84 0 0.946 -0.0241093
159764 0.0979513 3 1 1 4378 1658 234 82 3563 1237 237 88 0 1.253 0.0979513
159765 0.8038673 4 1 1 3486 1409 238 83 755 255 242 86 0 6.366 0.8038673
159766 0.0838613 1 2 1 606 180 279 94 581 136 310 102 0 1.213 0.0838613
159767 -0.0052433 2 2 1 865 200 247 83 881 242 252 88 0 0.988 -0.0052433
159768 0.0993353 3 2 1 1772 781 233 106 1460 628 229 100 0 1.257 0.0993353
159769 -0.0510983 4 2 1 1266 255 250 87 1397 314 248 85 0 0.889 -0.0510983
159770 -0.2456523 1 3 1 563 170 288 87 788 209 301 102 0 0.568 -0.2456523
159771 0.0916673 2 3 1 1206 415 238 86 1045 289 257 86 0 1.235 0.0916673
159772 -0.1481303 3 3 1 422 171 243 86 483 184 230 86 0 0.711 -0.1481303
159773 -0.1524273 4 3 1 555 138 245 91 700 165 257 83 0 0.704 -0.1524273
159774 0.2340113 1 4 1 2202 724 282 90 1426 445 300 100 0 1.714 0.2340113
159775 -0.0942043 2 4 1 1387 397 238 84 1677 345 242 84 0 0.805 -0.0942043
159776 -0.0114413 3 4 1 733 405 241 80 748 394 240 86 0 0.974 -0.0114413
159777 -0.0624823 4 4 1 422 145 230 92 469 182 246 96 0 0.866 -0.0624823
159778 0.0248963 1 5 1 579 213 300 137 569 191 304 115 0 1.059 0.0248963
159779 -0.1456943 2 5 1 649 225 233 85 827 242 242 88 0 0.715 -0.1456943
159780 -0.7695513 3 5 1 689 337 233 81 2946 1695 243 82 0 0.170 -0.7695513
159781 -0.2365723 4 5 1 361 123 237 84 444 135 229 81 0 0.580 -0.2365723

Total number of rows: 9128

Table truncated, full table size 665 Kbytes.




Supplementary data files not provided
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