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Sample GSM5372 Query DataSets for GSM5372
Status Public on Apr 02, 2003
Title S34-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S34-M1
mAdb experiment ID: 25470
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0629583 1 1 1 1113 393 282 168 1415 264 451 110 0 1.156 0.0629583
159763 0.0773683 2 1 1 1383 442 284 426 1655 373 421 515 0 1.195 0.0773683
159764 0.3059963 3 1 1 2221 615 260 165 1830 248 530 129 0 2.023 0.3059963
159765 0.3459623 4 1 1 888 297 253 150 882 164 498 108 0 2.218 0.3459623
159766 0.1766703 1 2 1 714 288 285 202 827 181 444 350 0 1.502 0.1766703
159767 0.2713773 2 2 1 960 438 265 468 914 238 415 568 0 1.868 0.2713773
159768 0.1445743 3 2 1 1027 346 250 145 1275 222 528 112 0 1.395 0.1445743
159769 -0.0008693 4 2 1 1012 355 228 144 1556 319 502 106 0 0.998 -0.0008693
159770 -0.0277973 1 3 1 687 325 285 177 1028 180 453 382 0 0.938 -0.0277973
159771 0.2132523 2 3 1 966 361 256 638 990 237 407 261 0 1.634 0.2132523
159772 0.0128373 3 3 1 462 188 247 151 812 176 532 120 0 1.030 0.0128373
159773 0.1034623 4 3 1 546 237 250 161 828 173 515 108 0 1.269 0.1034623
159774 0.2796673 1 4 1 1815 650 281 171 1541 342 460 114 0 1.904 0.2796673
159775 -0.0990873 2 4 1 908 304 265 221 1485 261 401 130 0 0.796 -0.0990873
159776 0.1395643 3 4 1 518 215 228 148 807 191 525 118 0 1.379 0.1395643
159777 0.0569053 4 4 1 499 225 256 158 834 192 548 115 0 1.140 0.0569053
159778 0.0802663 1 5 1 709 304 302 171 921 157 467 114 0 1.203 0.0802663
159779 0.0802663 2 5 1 719 326 251 144 907 216 385 94 0 1.203 0.0802663
159780 -0.3036443 3 5 1 552 243 251 147 1333 286 520 111 0 0.497 -0.3036443
159781 -0.0423933 4 5 1 466 321 272 154 838 213 551 131 0 0.907 -0.0423933

Total number of rows: 9128

Table truncated, full table size 682 Kbytes.




Supplementary data files not provided
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