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Sample GSM5379 Query DataSets for GSM5379
Status Public on Apr 02, 2003
Title S44-PN2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S44-PN2
mAdb experiment ID: 25479
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.1191863 1 1 1 580 203 212 91 782 212 273 82 0 0.760 -0.1191863
159763 -0.0893763 2 1 1 944 269 194 94 1228 384 259 76 0 0.814 -0.0893763
159764 -0.3925453 3 1 1 701 299 222 102 1547 321 304 87 0 0.405 -0.3925453
159765 0.1065313 4 1 1 1009 248 192 94 936 186 264 80 0 1.278 0.1065313
159766 -0.0809223 1 2 1 397 145 209 87 511 102 273 75 0 0.830 -0.0809223
159767 -0.0867163 2 2 1 651 196 199 100 840 178 260 84 0 0.819 -0.0867163
159768 0.0157793 3 2 1 874 220 222 94 967 205 306 88 0 1.037 0.0157793
159769 -0.2557073 4 2 1 882 311 193 95 1581 251 275 83 0 0.555 -0.2557073
159770 -0.1056843 1 3 1 458 168 209 92 604 155 270 81 0 0.784 -0.1056843
159771 -0.1536633 2 3 1 556 209 198 96 794 186 258 74 0 0.702 -0.1536633
159772 -0.2097153 3 3 1 422 218 246 111 627 218 327 115 0 0.617 -0.2097153
159773 0.1395643 4 3 1 793 217 200 91 718 174 266 81 0 1.379 0.1395643
159774 -0.0515873 1 4 1 912 252 206 99 1109 226 273 83 0 0.888 -0.0515873
159775 -0.0599823 2 4 1 972 251 196 90 1181 319 244 71 0 0.871 -0.0599823
159776 -0.0087743 3 4 1 485 165 209 91 584 148 288 80 0 0.980 -0.0087743
159777 -0.1237823 4 4 1 428 187 207 92 581 152 272 83 0 0.752 -0.1237823
159778 -0.0013053 1 5 1 504 173 209 103 592 147 281 83 0 0.997 -0.0013053
159779 -0.3080353 2 5 1 620 269 200 89 1154 371 257 77 0 0.492 -0.3080353
159780 -0.8041003 3 5 1 330 165 222 92 1017 530 294 83 0 0.157 -0.8041003
159781 -0.0947443 4 5 1 436 207 202 92 594 200 288 88 0 0.804 -0.0947443

Total number of rows: 9128

Table truncated, full table size 663 Kbytes.




Supplementary data files not provided
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