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Sample GSM5381 Query DataSets for GSM5381
Status Public on Apr 02, 2003
Title S45-PN2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S45-PN2
mAdb experiment ID: 25481
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0838613 1 1 1 1381 268 288 75 1376 281 610 142 0 1.213 0.0838613
159763 0.3055663 2 1 1 2153 274 216 58 1255 208 440 123 0 2.021 0.3055663
159764 0.2201083 3 1 1 2123 302 202 59 1408 272 424 111 0 1.660 0.2201083
159765 -0.0056833 4 1 1 681 114 197 54 808 142 391 176 0 0.987 -0.0056833
159766 0.1516763 1 2 1 863 163 276 75 921 167 569 136 0 1.418 0.1516763
159767 0.1322603 2 2 1 975 157 211 57 916 204 437 110 0 1.356 0.1322603
159768 0.1072103 3 2 1 1238 246 202 53 1105 205 417 111 0 1.280 0.1072103
159769 0.1132753 4 2 1 1232 411 189 56 1068 268 385 158 0 1.298 0.1132753
159770 -0.1844223 1 3 1 783 191 260 72 1214 297 534 139 0 0.654 -0.1844223
159771 0.1894903 2 3 1 1023 199 217 66 872 217 429 119 0 1.547 0.1894903
159772 -0.1146393 3 3 1 463 101 201 51 682 155 392 113 0 0.768 -0.1146393
159773 -0.4034033 4 3 1 668 156 197 56 1390 367 377 115 0 0.395 -0.4034033
159774 0.4268363 1 4 1 3425 1090 267 68 1557 294 552 142 0 2.672 0.4268363
159775 -0.0515873 2 4 1 1306 280 212 74 1474 286 427 122 0 0.888 -0.0515873
159776 0.0644583 3 4 1 603 125 191 57 696 153 394 113 0 1.160 0.0644583
159777 -0.0788343 4 4 1 465 149 203 56 671 190 404 121 0 0.834 -0.0788343
159778 -0.1163393 1 5 1 633 147 275 65 955 169 557 134 0 0.765 -0.1163393
159779 -0.0030513 2 5 1 665 132 213 133 803 149 416 148 0 0.993 -0.0030513
159780 -0.4259693 3 5 1 438 88 204 57 935 171 405 112 0 0.375 -0.4259693
159781 -0.1493543 4 5 1 459 129 213 57 714 199 419 115 0 0.709 -0.1493543

Total number of rows: 9128

Table truncated, full table size 666 Kbytes.




Supplementary data files not provided
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