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Sample GSM5387 Query DataSets for GSM5387
Status Public on Apr 02, 2003
Title S49-PN2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S49-PN2
mAdb experiment ID: 25487
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.1897673 1 1 1 1414 340 403 155 2198 397 756 155 0 0.646 -0.1897673
159763 -0.1029233 2 1 1 2191 424 312 149 2778 391 584 145 0 0.789 -0.1029233
159764 -0.2806693 3 1 1 2190 809 314 306 3863 1064 563 142 0 0.524 -0.2806693
159765 0.2839793 4 1 1 1220 1157 299 528 977 359 536 210 0 1.923 0.2839793
159766 -0.0614803 1 2 1 1026 210 405 136 1409 249 750 158 0 0.868 -0.0614803
159767 -0.2350773 2 2 1 1125 306 296 106 1883 318 572 135 0 0.582 -0.2350773
159768 -0.0599823 3 2 1 1567 289 313 256 1903 314 577 144 0 0.871 -0.0599823
159769 0.1598683 4 2 1 2460 1341 312 758 1920 660 551 172 0 1.445 0.1598683
159770 -0.2471843 1 3 1 1112 222 393 158 1907 476 737 149 0 0.566 -0.2471843
159771 -0.1811153 2 3 1 1245 269 299 1475 1899 267 577 319 0 0.659 -0.1811153
159772 -0.2915793 3 3 1 614 205 315 295 1112 265 573 148 0 0.511 -0.2915793
159773 0.2960073 4 3 1 2002 797 319 1178 1329 328 545 3461 0 1.977 0.2960073
159774 -0.2652003 1 4 1 1915 494 386 123 3296 634 701 156 0 0.543 -0.2652003
159775 -0.1426683 2 4 1 2294 547 294 1475 3121 501 562 320 0 0.720 -0.1426683
159776 -0.0690513 3 4 1 836 218 311 308 1140 202 573 255 0 0.853 -0.0690513
159777 0.0277573 4 4 1 1056 277 388 255 1168 199 591 212 0 1.066 0.0277573
159778 -0.1687703 1 5 1 1017 262 398 123 1549 281 708 156 0 0.678 -0.1687703
159779 -0.2487213 2 5 1 1102 242 284 149 1891 423 556 145 0 0.564 -0.2487213
159780 -0.6478173 3 5 1 690 211 304 106 2148 483 567 134 0 0.225 -0.6478173
159781 4 5 1 1192 979 348 656 988 284 592 155 -50 1.963 0.2929203

Total number of rows: 9128

Table truncated, full table size 692 Kbytes.




Supplementary data files not provided
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