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Sample GSM5391 Query DataSets for GSM5391
Status Public on Apr 02, 2003
Title S53-PN2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S53-PN2
mAdb experiment ID: 25491
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0655803 1 1 1 1858 669 278 128 1682 639 297 94 0 1.163 0.0655803
159763 -0.0840733 2 1 1 1306 342 256 95 1565 402 266 87 0 0.824 -0.0840733
159764 -0.2182453 3 1 1 1594 552 270 96 2513 755 282 85 0 0.605 -0.2182453
159765 0.1405083 4 1 1 991 300 291 96 801 135 285 87 0 1.382 0.1405083
159766 -0.0840733 1 2 1 836 311 271 94 994 608 295 87 0 0.824 -0.0840733
159767 -0.0250283 2 2 1 868 281 253 91 925 325 261 89 0 0.944 -0.0250283
159768 -0.1555233 3 2 1 924 324 281 97 1217 309 279 87 0 0.699 -0.1555233
159769 -0.1555233 4 2 1 1206 375 288 102 1623 261 285 84 0 0.699 -0.1555233
159770 -0.1890963 1 3 1 588 408 272 92 787 566 289 88 0 0.647 -0.1890963
159771 -0.1056843 2 3 1 768 247 267 90 915 278 264 151 0 0.784 -0.1056843
159772 -0.1203313 3 3 1 450 230 282 102 504 234 278 100 0 0.758 -0.1203313
159773 -0.1681303 4 3 1 1042 372 295 99 1408 389 287 91 0 0.679 -0.1681303
159774 0.0538463 1 4 1 1620 342 267 98 1506 287 288 88 0 1.132 0.0538463
159775 -0.0985423 2 4 1 1022 316 257 87 1250 321 272 140 0 0.797 -0.0985423
159776 -0.0034883 3 4 1 611 176 287 91 610 163 277 92 0 0.992 -0.0034883
159777 -0.0996333 4 4 1 526 193 292 91 584 179 284 88 0 0.795 -0.0996333
159778 -0.1040253 1 5 1 649 293 277 1231 772 406 290 863 0 0.787 -0.1040253
159779 -0.1001793 2 5 1 735 233 269 87 876 365 278 84 0 0.794 -0.1001793
159780 -0.6478173 3 5 1 543 295 276 93 1485 899 274 83 0 0.225 -0.6478173
159781 -0.1624123 4 5 1 495 263 289 96 590 197 285 83 0 0.688 -0.1624123

Total number of rows: 9128

Table truncated, full table size 670 Kbytes.




Supplementary data files not provided
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