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Sample GSM539281 Query DataSets for GSM539281
Status Public on May 01, 2010
Title Cardiac left ventricle_sham operated_1day_ rep1
Sample type RNA
 
Source name Cardiac left ventricle_1day
Organism Rattus norvegicus
Characteristics strain: Wistar
sex: male
tissue: cardiac left ventricle
treatment: sham operated
Treatment protocol Abdominal aorta was ligated to induce cardiac hypertrophy
Extracted molecule total RNA
Extraction protocol Cardiac tissue was put in RNAlater and extracted using Qiagen RNeasy Fibrous Tissue Mini Kit for total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description 1664386179_G
Data processing Cubic spline normalization, subtracted background, False Discovery Rate using Illumina Beadstudio 3.3 with gene expression module 3.4.0 (GenomeStudio).
 
Submission date Apr 29, 2010
Last update date Apr 30, 2010
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6101
Series (1)
GSE21600 Time course study of experimental cardiac hypertrophy in rat

Data table header descriptions
ID_REF
VALUE cublic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1369537 92.63805 47 9.364247 0.002424242
ILMN_1358051 -4.705675 51 4.367424 0.6133333
ILMN_1361746 3.130377 48 3.070481 0.3248485
ILMN_1352975 -9.536038 45 3.808593 0.84
ILMN_1368384 179.6104 37 14.3884 0
ILMN_1355285 33.70655 38 3.657447 0.03636364
ILMN_1376898 44.64424 42 6.558257 0.01939394
ILMN_1368325 50.37096 44 6.664624 0.01454545
ILMN_1353563 65.33154 34 12.73976 0.007272727
ILMN_1348794 -14.54285 28 3.057247 0.9672727
ILMN_1364273 173.6774 40 14.83187 0
ILMN_1369433 36.73486 40 5.227022 0.03272727
ILMN_1349007 186.2615 42 15.17832 0
ILMN_1374156 32.20009 33 4.705145 0.04
ILMN_1360232 6.489601 51 3.92283 0.2606061
ILMN_1355155 1120.163 58 32.73026 0
ILMN_1362563 35.13724 35 6.080858 0.03515152
ILMN_1355815 20.69917 39 4.413353 0.09818182
ILMN_1373215 10.29918 36 4.54671 0.2060606
ILMN_1374139 763.3981 33 36.23339 0

Total number of rows: 22523

Table truncated, full table size 926 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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