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Sample GSM539285 Query DataSets for GSM539285
Status Public on May 01, 2010
Title Cardiac left ventricle_sham operated_1day_ rep5
Sample type RNA
 
Source name Cardiac left ventricle_1day
Organism Rattus norvegicus
Characteristics strain: Wistar
sex: male
tissue: cardiac left ventricle
treatment: sham operated
Treatment protocol Abdominal aorta was ligated to induce cardiac hypertrophy
Extracted molecule total RNA
Extraction protocol Cardiac tissue was put in RNAlater and extracted using Qiagen RNeasy Fibrous Tissue Mini Kit for total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description 1664386179_K
Data processing Cubic spline normalization, subtracted background, False Discovery Rate using Illumina Beadstudio 3.3 with gene expression module 3.4.0 (GenomeStudio).
 
Submission date Apr 29, 2010
Last update date Apr 30, 2010
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6101
Series (1)
GSE21600 Time course study of experimental cardiac hypertrophy in rat

Data table header descriptions
ID_REF
VALUE cublic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1369537 79.64459 43 7.569058 0.004848485
ILMN_1358051 -4.801015 30 4.816726 0.5915151
ILMN_1361746 23.96801 37 5.15415 0.08848485
ILMN_1352975 -13.87954 42 2.811085 0.9551515
ILMN_1368384 189.6173 37 19.11381 0
ILMN_1355285 59.25624 39 6.897962 0.006060606
ILMN_1376898 29.53832 35 4.870686 0.04727273
ILMN_1368325 56.32259 48 8.034986 0.006060606
ILMN_1353563 49.98413 35 5.768153 0.007272727
ILMN_1348794 -15.87203 23 4.84638 0.9830303
ILMN_1364273 233.7296 42 9.096019 0
ILMN_1369433 26.45144 53 4.592761 0.06666667
ILMN_1349007 188.7883 34 18.56458 0
ILMN_1374156 34.07408 48 5.147513 0.03757576
ILMN_1360232 0.3883321 25 5.956944 0.3733333
ILMN_1355155 1261.638 27 41.68846 0
ILMN_1362563 45.4447 47 5.324618 0.01333333
ILMN_1355815 38.17588 39 4.447929 0.02545455
ILMN_1373215 28.15551 36 6.33171 0.05575757
ILMN_1374139 788.248 39 43.31281 0

Total number of rows: 22523

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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