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Sample GSM539306 Query DataSets for GSM539306
Status Public on May 01, 2010
Title Cardiac left ventricle_sham operated_42days_ rep3
Sample type RNA
 
Source name Cardiac left ventricle_42days
Organism Rattus norvegicus
Characteristics strain: Wistar
sex: male
tissue: cardiac left ventricle
treatment: sham operated
Treatment protocol Abdominal aorta was ligated to induce cardiac hypertrophy
Extracted molecule total RNA
Extraction protocol Cardiac tissue was put in RNAlater and extracted using Qiagen RNeasy Fibrous Tissue Mini Kit for total RNA.
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description 1943393042_I
Data processing Cubic spline normalization, subtracted background, False Discovery Rate using Illumina Beadstudio 3.3 with gene expression module 3.4.0 (GenomeStudio).
 
Submission date Apr 29, 2010
Last update date Apr 30, 2010
Contact name Urban Hellman
E-mail(s) urban.hellman@medbio.umu.se
Phone +46907851621
Organization name Umea University
Department Public health and clinical medicine
Street address Nus 6M
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6101
Series (1)
GSE21600 Time course study of experimental cardiac hypertrophy in rat

Data table header descriptions
ID_REF
VALUE cublic spline normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1370549 808.9622 35 27.47746 0
ILMN_1369537 121.7357 38 12.84792 0
ILMN_1358051 36.16874 36 11.41327 0.003699137
ILMN_1361746 6.861916 61 6.41774 0.2823674
ILMN_1352975 -13.60132 37 7.443521 0.8705302
ILMN_1368384 157.6625 33 15.81991 0
ILMN_1355285 27.12302 43 5.03344 0.03699137
ILMN_1376898 16.00037 67 5.55724 0.1331689
ILMN_1368325 24.15641 34 11.15204 0.05795315
ILMN_1353563 30.70547 39 10.1008 0.01972873
ILMN_1348794 -12.37609 27 5.963518 0.8409371
ILMN_1364273 227.7849 38 14.67185 0
ILMN_1369433 47.28334 41 12.46416 0
ILMN_1349007 179.9865 46 15.11939 0
ILMN_1374156 21.14532 43 8.512429 0.07644883
ILMN_1360232 18.76903 43 6.900194 0.1048089
ILMN_1355155 1402.642 27 58.4557 0
ILMN_1362563 32.62627 47 8.777087 0.01479655
ILMN_1355815 27.89519 34 7.713783 0.03575832
ILMN_1373215 3.218546 23 5.568607 0.3847102

Total number of rows: 22523

Table truncated, full table size 898 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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