|
Status |
Public on May 05, 2010 |
Title |
Lymph node DCs + Papain for 4h |
Sample type |
RNA |
|
|
Source name |
Lymph node
|
Organism |
Mus musculus |
Characteristics |
strain: C57BL/6 cell type: Lymph node CD11c+ DCs agent: Papain time: 4h
|
Treatment protocol |
Lymph node CD11c+ DCs treated with Papain for 4h
|
Growth protocol |
CD11c+ LN DCs were purified using the MACS-column from Miltenyi. Cells were cultured in the presence of 3T3-CD40L cells and treated with papain (25 µg/ml) for 4h
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted using the Qiagen RNeasy Mini Kit protocol according to the manufacturer’s instructions. Samples were treated with DNase
|
Label |
Biotin
|
Label protocol |
As per Vanderbilt Microarray Shared Resource Standard Protocol
|
|
|
Hybridization protocol |
As per Vanderbilt Microarray Shared Resource Standard Protocol
|
Scan protocol |
As per Vanderbilt Microarray Shared Resource Standard Protocol
|
Description |
Gene expression from mouse lymph node CD11c+ DCs treated with Papain for 4h
|
Data processing |
For this analysis, we used Affymetrix Mouse Genome 430 2.0 Array (GPL1261), but instead of using Affymetrix’s sequence clusters to define genes, gene sequence clusters were RMA pre-processed and normalized with the UniGene Custom CDF Version 10 available fromhttp://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp to yield a list of 19,508 genes
|
|
|
Submission date |
Apr 29, 2010 |
Last update date |
May 04, 2010 |
Contact name |
Helder I. Nakaya |
E-mail(s) |
hnakaya@usp.br
|
Phone |
+551126481130
|
Organization name |
Universidade de São Paulo
|
Lab |
csbiology.com
|
Street address |
AVENIDA PROFESSOR LINEU PRESTES, 580, Block 17
|
City |
SÃO PAULO |
State/province |
SÃO PAULO |
ZIP/Postal code |
05508000 |
Country |
Brazil |
|
|
Platform ID |
GPL10369 |
Series (1) |
GSE21602 |
Microarray analyses of lymph node dendritic cells (DCs) stimulated in vitro with papain or LPS |
|