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Sample GSM5396 Query DataSets for GSM5396
Status Public on Apr 02, 2003
Title S61
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S61
mAdb experiment ID: 28321
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0969103 1 1 1 570 378 110 16 564 310 196 27 0 1.250 0.0969103
159763 -0.0150233 2 1 1 393 121 106 15 487 138 190 27 0 0.966 -0.0150233
159764 0.2977613 3 1 1 1175 368 99 15 713 170 171 25 0 1.985 0.2977613
159765 -0.3045183 4 1 1 182 89 113 17 309 125 170 26 0 0.496 -0.3045183
159766 -0.1844223 1 2 1 179 79 111 21 296 93 192 35 0 0.654 -0.1844223
159767 0.0715143 2 2 1 321 78 110 16 371 90 192 28 0 1.179 0.0715143
159768 0.2893663 3 2 1 397 115 101 15 321 93 169 25 0 1.947 0.2893663
159769 0.0366293 4 2 1 767 174 113 18 774 194 173 25 0 1.088 0.0366293
159770 -0.0877783 1 3 1 545 375 115 16 722 469 196 29 0 0.817 -0.0877783
159771 0.1510633 2 3 1 285 92 108 17 315 90 190 26 0 1.416 0.1510633
159772 0.1408223 3 3 1 277 134 100 19 295 109 167 26 0 1.383 0.1408223
159773 -0.1260983 4 3 1 292 225 117 19 412 206 178 33 0 0.748 -0.1260983
159774 0.3057813 1 4 1 941 548 114 16 603 211 194 29 0 2.022 0.3057813
159775 0.0077483 2 4 1 339 94 107 17 418 108 190 28 0 1.018 0.0077483
159776 0.0629583 3 4 1 224 103 98 15 273 92 164 26 0 1.156 0.0629583
159777 -0.0043653 4 4 1 216 185 120 62 274 176 177 153 0 0.990 -0.0043653
159778 -0.1203313 1 5 1 250 59 109 15 376 83 190 27 0 0.758 -0.1203313
159779 -0.1732773 2 5 1 168 69 111 18 277 81 192 30 0 0.671 -0.1732773
159780 0.3630483 3 5 1 713 295 97 15 431 138 164 26 0 2.307 0.3630483
159781 0.0285713 4 5 1 200 213 122 17 253 174 180 28 0 1.068 0.0285713

Total number of rows: 9128

Table truncated, full table size 642 Kbytes.




Supplementary data files not provided

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